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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11120 and 11121 are separated by 437 nucleotides
11121 and 11122 are separated by 131 nucleotides
11122 and 11123 are separated by 268 nucleotides
11123 and 11124 are separated by 345 nucleotides
mRNA_2752: 11120 - HMMPfam-F-box-like-PF12937, at 138,009 to 139,329
11120
mRNA_2753: 11121 - HMMPfam-F-box-like-PF12937, at 139,767 to 141,011
11121
mRNA_2754: 11122 - SUPERFAMILY--SSF50249, at 141,143 to 143,248
11122
mRNA_2755: 11123 - K20247 EGT2 hercynylcysteine sulfoxide lyase, at 143,517 to 145,999
11123
mRNA_2756: 11124 - KOG2450 Aldehyde dehydrogenase, at 146,345 to 148,269
11124
Group
Condition
mRNA
_2752
mRNA
_2753
mRNA
_2754
mRNA
_2755
mRNA
_2756
11120
11121
11122
11123
11124
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.3
-0.3
-0.1
-0.1
auxotrophy
Dropout Complete
-0.0
-0.1
+0.1
-0.3
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.2
-0.4
+0.2
-0.4
growth on ricinoleic acid
YNB Glucose
-0.1
-0.3
-0.1
+0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
-0.2
-0.2
+0.0
growth on ypd
YPD
+0.1
-0.1
-0.4
-0.1
+0.2
growth on oleic acid
YNB Glucose
+0.2
-0.3
+0.1
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.2
+0.2
-0.1
-0.0
auxotrophy
YNB Glucose
+0.1
-0.2
+0.1
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.1
+0.0
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.1
-0.0
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.4
+0.1
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.2
+0.2
-0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.1
+0.0
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.1
+0.2
-0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.3
-0.1
+0.1
+0.2
growth on oleic acid
YNB Oleic Acid
-0.0
+0.0
+0.2
-0.1
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.0
-0.0
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.0
-0.0
-0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.0
+0.1
+0.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.0
+0.1
+0.1
-0.0
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