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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11122 and 11123 are separated by 268 nucleotides
11123 and 11124 are separated by 345 nucleotides
11124 and 11125 are separated by 1223 nucleotides
11125 and 11126 are separated by 267 nucleotides
mRNA_2754: 11122 - SUPERFAMILY--SSF50249, at 141,143 to 143,248
11122
mRNA_2755: 11123 - K20247 EGT2 hercynylcysteine sulfoxide lyase, at 143,517 to 145,999
11123
mRNA_2756: 11124 - KOG2450 Aldehyde dehydrogenase, at 146,345 to 148,269
11124
mRNA_2757: 11125 - Hypothetical Protein, at 149,493 to 150,603
11125
mRNA_2758: 11126 - Hypothetical Protein, at 150,871 to 152,585
11126
Group
Condition
mRNA
_2754
mRNA
_2755
mRNA
_2756
mRNA
_2757
mRNA
_2758
11122
11123
11124
11125
11126
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.1
-0.1
-0.8
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.1
-0.1
-0.6
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.2
+0.2
-1.1
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.2
+0.0
-0.2
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.1
+0.2
-0.9
-0.1
auxotrophy
Dropout Complete
+0.1
-0.3
-0.2
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
+0.0
+0.1
-0.6
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
+0.2
-0.4
+0.2
+0.0
growth on oleic acid
YNB Oleic Acid
+0.2
-0.1
+0.0
-0.5
-0.1
auxotrophy
YNB Glucose
+0.1
-0.1
-0.1
-0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.0
-0.1
+0.0
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.1
-0.1
-0.0
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.1
-0.0
-0.3
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.0
-0.1
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.2
-0.1
-0.3
+0.3
growth on oleic acid
YNB Glucose
+0.1
+0.0
-0.1
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
-0.1
-0.3
+0.2
growth on ypd
YPD
-0.4
-0.1
+0.2
-0.2
+0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.1
-0.0
+0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.2
+0.1
+0.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.1
+0.0
+0.9
+0.2
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