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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11125 and 11126 are separated by 267 nucleotides
11126 and 11127 are separated by 262 nucleotides
11127 and 11128 are separated by 414 nucleotides
11128 and 11129 are separated by 665 nucleotides
mRNA_2757: 11125 - Hypothetical Protein, at 149,493 to 150,603
11125
mRNA_2758: 11126 - Hypothetical Protein, at 150,871 to 152,585
11126
mRNA_2759: 11127 - K12158 NEDD8 ubiquitin-like protein Nedd8, at 152,848 to 153,537
11127
mRNA_2760: 11128 - HMMPfam-Acyltransferase-PF01553,SMART-Phosphate acyltransferases-SM00563,SUPERFAMILY--SSF69593, at 153,952 to 156,416
11128
mRNA_2761: 11129 - K00031 IDH1, IDH2, icd isocitrate dehydrogenase, at 157,082 to 158,929
11129
Group
Condition
mRNA
_2757
mRNA
_2758
mRNA
_2759
mRNA
_2760
mRNA
_2761
11125
11126
11127
11128
11129
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.2
N.D.
-0.3
-1.8
growth on ricinoleic acid
YNB Glucose
-0.6
-0.0
N.D.
-0.3
-1.2
auxotrophy
YNB Glucose
-0.2
-0.1
N.D.
+0.3
-1.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
-0.1
N.D.
-0.0
-0.6
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.1
N.D.
+0.2
-1.8
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.1
N.D.
+0.1
-0.9
growth on oleic acid
YNB Glucose
+0.0
+0.0
N.D.
+0.3
-1.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.1
+0.0
N.D.
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.8
+0.1
N.D.
+0.0
-0.3
auxotrophy
Dropout Complete
-0.1
-0.1
N.D.
-0.2
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.3
N.D.
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.2
N.D.
+0.0
-0.9
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.0
N.D.
+0.4
-0.8
growth on ypd
YPD
-0.2
+0.7
N.D.
-0.6
-0.1
growth on oleic acid
YNB Oleic Acid
-0.5
-0.1
N.D.
+0.1
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.0
N.D.
+0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.3
N.D.
+0.1
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
+0.2
N.D.
-0.1
+0.8
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.3
N.D.
+0.3
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.9
+0.2
N.D.
+0.3
-0.9
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.0
N.D.
+0.2
+0.3
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