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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11127 and 11128 are separated by 414 nucleotides
11128 and 11129 are separated by 665 nucleotides
11129 and 11130 are separated by 231 nucleotides
11130 and 11131 are separated by 292 nucleotides
mRNA_2759: 11127 - K12158 NEDD8 ubiquitin-like protein Nedd8, at 152,848 to 153,537
11127
mRNA_2760: 11128 - HMMPfam-Acyltransferase-PF01553,SMART-Phosphate acyltransferases-SM00563,SUPERFAMILY--SSF69593, at 153,952 to 156,416
11128
mRNA_2761: 11129 - K00031 IDH1, IDH2, icd isocitrate dehydrogenase, at 157,082 to 158,929
11129
mRNA_2762: 11130 - BLAST Protein pof8 [Termitomyces sp. J132], at 159,161 to 161,620
11130
mRNA_2763: 11131 - Hypothetical Protein, at 161,913 to 163,067
11131
Group
Condition
mRNA
_2759
mRNA
_2760
mRNA
_2761
mRNA
_2762
mRNA
_2763
11127
11128
11129
11130
11131
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.3
-1.8
+0.0
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
-0.3
-1.2
-0.3
-0.4
auxotrophy
YNB Glucose
N.D.
+0.3
-1.7
-0.1
-0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
-1.8
+0.2
-0.3
growth on oleic acid
YNB Glucose
N.D.
+0.3
-1.4
+0.0
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.2
+0.3
-0.1
-1.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.4
-0.8
-0.0
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.0
-0.6
-0.3
+0.0
auxotrophy
Dropout Complete
N.D.
-0.2
-0.5
+0.2
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
-0.9
+0.1
-0.0
growth on ypd
YPD
N.D.
-0.6
-0.1
-0.0
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.1
+0.8
-0.3
-0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.3
-0.3
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.0
-0.3
+0.0
-0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.3
-0.2
+0.2
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.0
-0.9
+0.2
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.3
-0.9
+0.1
+0.5
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
+0.3
-0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
+0.3
+0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
+0.1
+0.2
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.2
+0.3
+0.1
+0.2
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