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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11135 and 11136 are separated by 145 nucleotides
11136 and 11137 are separated by 223 nucleotides
11137 and 11138 are separated by 342 nucleotides
11138 and 11139 are separated by 809 nucleotides
mRNA_2767: 11135 - K10084 EDEM1 ER degradation enhancer, mannosidase alpha-like 1, at 166,551 to 170,333
11135
mRNA_2768: 11136 - K08681 pdxT, pdx2 5'-phosphate synthase pdxT subunit, at 170,479 to 171,341
11136
mRNA_2769: 11137 - K06215 pdxS, pdx1 pyridoxal 5'-phosphate synthase pdxS subunit, at 171,565 to 173,167
11137
mRNA_2770: 11138 - KOG0400 40S ribosomal protein S13, at 173,510 to 175,017
11138
mRNA_2771: 11139 - KOG4072 Signal peptidase complex, subunit SPC25, at 175,827 to 177,001
11139
Group
Condition
mRNA
_2767
mRNA
_2768
mRNA
_2769
mRNA
_2770
mRNA
_2771
11135
11136
11137
11138
11139
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.4
+0.2
-0.0
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.1
+0.0
+0.2
-0.9
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.5
-0.2
+0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.4
-0.2
+0.1
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.4
+0.1
-0.1
-0.2
growth on oleic acid
YNB Glucose
+0.0
-0.1
-0.2
-0.2
+0.4
auxotrophy
YNB Glucose
+0.0
-0.2
-0.0
+0.0
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.0
-0.3
+0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
+0.1
-0.3
+0.4
+0.3
auxotrophy
Dropout Complete
+0.0
-0.2
-0.1
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.0
+0.1
+0.0
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.2
-0.1
-0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.2
+0.1
+0.2
+0.5
growth on oleic acid
YNB Oleic Acid
-0.0
-0.1
-0.1
-0.1
+0.7
growth on ricinoleic acid
YNB Glucose
+0.3
-0.0
+0.1
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.0
+0.1
+0.3
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.0
+0.0
+0.2
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.1
-0.1
+0.1
+0.4
growth on ypd
YPD
-0.3
-0.0
+0.2
+0.2
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.4
+0.0
+0.1
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.1
+0.3
+0.1
+0.3
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