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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11136 and 11137 are separated by 223 nucleotides
11137 and 11138 are separated by 342 nucleotides
11138 and 11139 are separated by 809 nucleotides
11139 and 11140 are separated by 190 nucleotides
mRNA_2768: 11136 - K08681 pdxT, pdx2 5'-phosphate synthase pdxT subunit, at 170,479 to 171,341
11136
mRNA_2769: 11137 - K06215 pdxS, pdx1 pyridoxal 5'-phosphate synthase pdxS subunit, at 171,565 to 173,167
11137
mRNA_2770: 11138 - KOG0400 40S ribosomal protein S13, at 173,510 to 175,017
11138
mRNA_2771: 11139 - KOG4072 Signal peptidase complex, subunit SPC25, at 175,827 to 177,001
11139
mRNA_2772: 11140 - SUPERFAMILY--SSF56112, at 177,192 to 178,295
11140
Group
Condition
mRNA
_2768
mRNA
_2769
mRNA
_2770
mRNA
_2771
mRNA
_2772
11136
11137
11138
11139
11140
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.0
+0.2
-0.9
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.1
-0.1
-0.2
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.2
-0.0
-0.6
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.3
+0.0
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.5
-0.2
+0.1
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.1
+0.0
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.1
+0.3
-0.0
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.1
+0.1
+0.4
-0.3
auxotrophy
Dropout Complete
-0.2
-0.1
+0.1
+0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.2
+0.1
+0.3
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.1
-0.1
+0.2
-0.1
growth on ricinoleic acid
YNB Glucose
-0.0
+0.1
-0.0
-0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.1
+0.2
+0.5
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.3
+0.1
+0.3
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.3
+0.4
+0.3
-0.1
growth on oleic acid
YNB Glucose
-0.1
-0.2
-0.2
+0.4
+0.5
auxotrophy
YNB Glucose
-0.2
-0.0
+0.0
+0.1
+0.5
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
-0.1
+0.7
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.0
+0.2
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.0
+0.1
+0.2
+0.0
growth on ypd
YPD
-0.0
+0.2
+0.2
+0.6
+0.2
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