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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11139 and 11140 are separated by 190 nucleotides
11140 and 11141 are separated by 521 nucleotides
11141 and 11142 are separated by 1049 nucleotides
11142 and 11143 are separated by 369 nucleotides
mRNA_2771: 11139 - KOG4072 Signal peptidase complex, subunit SPC25, at 175,827 to 177,001
11139
mRNA_2772: 11140 - SUPERFAMILY--SSF56112, at 177,192 to 178,295
11140
mRNA_2773: 11141 - K02953 RP-S13e, RPS13 small subunit ribosomal protein S13e, at 178,817 to 179,625
11141
mRNA_2774: 11142 - K02991 RP-S6e, RPS6 small subunit ribosomal protein S6e, at 180,675 to 181,907
11142
mRNA_2775: 11143 - KOG1646 40S ribosomal protein S6, at 182,277 to 183,930
11143
Group
Condition
mRNA
_2771
mRNA
_2772
mRNA
_2773
mRNA
_2774
mRNA
_2775
11139
11140
11141
11142
11143
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.9
-0.2
N.D.
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.0
N.D.
N.D.
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
+0.1
N.D.
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.3
N.D.
N.D.
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.0
N.D.
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.1
N.D.
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.0
N.D.
N.D.
-0.2
auxotrophy
Dropout Complete
+0.2
+0.1
N.D.
N.D.
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.3
N.D.
N.D.
+0.0
growth on ricinoleic acid
YNB Glucose
-0.1
+0.2
N.D.
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.5
-0.3
N.D.
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.1
N.D.
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.2
N.D.
N.D.
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.5
N.D.
N.D.
+0.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.1
N.D.
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.4
N.D.
N.D.
-0.2
auxotrophy
YNB Glucose
+0.1
+0.5
N.D.
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.1
N.D.
N.D.
+0.3
growth on oleic acid
YNB Oleic Acid
+0.7
+0.1
N.D.
N.D.
-0.1
growth on oleic acid
YNB Glucose
+0.4
+0.5
N.D.
N.D.
-0.2
growth on ypd
YPD
+0.6
+0.2
N.D.
N.D.
+0.4
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