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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11143 and 11144 are separated by 58 nucleotides
11144 and 11145 are separated by 645 nucleotides
11145 and 11146 are separated by 1237 nucleotides
11146 and 11147 are separated by 129 nucleotides
mRNA_2775: 11143 - KOG1646 40S ribosomal protein S6, at 182,277 to 183,930
11143
mRNA_2776: 11144 - K14292 TGS1 trimethylguanosine synthase, at 183,989 to 185,404
11144
mRNA_2777: 11145 - K00948 PRPS, prsA ribose-phosphate pyrophosphokinase, at 186,050 to 187,746
11145
mRNA_2778: 11146 - K15264 NSUN5, WBSCR20 putative methyltransferase, at 188,984 to 191,295
11146
mRNA_2779: 11147 - K18278 THI5 pyrimidine precursor biosynthesis enzyme, at 191,425 to 193,018
11147
Group
Condition
mRNA
_2775
mRNA
_2776
mRNA
_2777
mRNA
_2778
mRNA
_2779
11143
11144
11145
11146
11147
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
-0.3
N.D.
-1.3
-0.8
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.0
N.D.
-0.8
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.2
N.D.
-0.3
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.1
N.D.
-0.4
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.4
N.D.
-0.2
+0.1
growth on ypd
YPD
+0.4
-0.4
N.D.
-0.2
-0.4
auxotrophy
YNB Glucose
-0.1
-0.1
N.D.
+0.4
-0.5
auxotrophy
Dropout Complete
-0.3
+0.1
N.D.
+0.0
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.1
N.D.
+0.2
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.1
N.D.
+0.3
-0.5
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
N.D.
+0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.1
N.D.
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.1
N.D.
+0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.2
N.D.
+0.2
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.3
N.D.
+0.7
-1.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.2
N.D.
+0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.3
N.D.
+0.5
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.3
N.D.
+0.4
-0.2
growth on oleic acid
YNB Glucose
-0.2
+0.3
N.D.
+0.4
+0.0
growth on ricinoleic acid
YNB Glucose
+0.0
+0.0
N.D.
+0.5
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.1
N.D.
+0.3
+0.1
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