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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11147 and 11148 are separated by 1083 nucleotides
11148 and 11149 are separated by 173 nucleotides
11149 and 11150 are separated by 1052 nucleotides
11150 and 11151 are separated by 847 nucleotides
mRNA_2779: 11147 - K18278 THI5 pyrimidine precursor biosynthesis enzyme, at 191,425 to 193,018
11147
mRNA_2780: 11148 - KOG0546 HSP90 co-chaperone CPR7/Cyclophilin, at 194,102 to 194,966
11148
mRNA_2781: 11149 - K09506 DNAJA5 DnaJ homolog subfamily A member 5, at 195,140 to 197,521
11149
mRNA_2782: 11150 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 198,574 to 201,487
11150
mRNA_2783: 11151 - BLAST NADH dehydrogenase (ubiquinone) Fe-S protein 5 [C..., at 202,335 to 202,970
11151
Group
Condition
mRNA
_2779
mRNA
_2780
mRNA
_2781
mRNA
_2782
mRNA
_2783
11147
11148
11149
11150
11151
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.3
-0.1
-1.9
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.8
-0.4
-0.6
-0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.6
-0.2
-1.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.2
+0.4
-2.4
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
-0.2
-0.2
-1.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.1
+0.4
-2.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.0
-0.2
-0.7
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
-0.3
-0.1
-0.2
N.D.
auxotrophy
YNB Glucose
-0.5
-0.0
+0.2
-0.7
N.D.
growth on ypd
YPD
-0.4
+0.0
-0.1
-0.7
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.5
+0.4
-0.1
-0.7
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.2
-0.2
-0.6
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.0
+0.2
-0.8
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
-0.0
+0.5
-0.1
N.D.
growth on oleic acid
YNB Glucose
+0.0
-0.2
-0.2
-0.1
N.D.
auxotrophy
Dropout Complete
-0.2
+0.0
-0.3
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.0
+0.0
-0.2
N.D.
growth on oleic acid
YNB Oleic Acid
+0.2
-0.3
+0.1
+0.5
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
-0.2
-0.4
+1.8
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.4
+0.2
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.2
+0.3
+1.4
N.D.
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