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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11149 and 11150 are separated by 1052 nucleotides
11150 and 11151 are separated by 847 nucleotides
11151 and 11152 are separated by 1646 nucleotides
11152 and 11153 are separated by 406 nucleotides
mRNA_2781: 11149 - K09506 DNAJA5 DnaJ homolog subfamily A member 5, at 195,140 to 197,521
11149
mRNA_2782: 11150 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 198,574 to 201,487
11150
mRNA_2783: 11151 - BLAST NADH dehydrogenase (ubiquinone) Fe-S protein 5 [C..., at 202,335 to 202,970
11151
mRNA_2784: 11152 - K20241 WDR44, RAB11BP WD repeat-containing protein 44, at 204,617 to 208,124
11152
mRNA_2785: 11153 - ProSiteProfiles-CRIB domain profile.-PS50108, at 208,531 to 209,463
11153
Group
Condition
mRNA
_2781
mRNA
_2782
mRNA
_2783
mRNA
_2784
mRNA
_2785
11149
11150
11151
11152
11153
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-1.2
N.D.
-0.9
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-2.3
N.D.
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-2.4
N.D.
+0.3
+0.5
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.8
N.D.
-0.1
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-1.9
N.D.
+0.9
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.6
N.D.
+0.0
+0.2
growth on ypd
YPD
-0.1
-0.7
N.D.
+0.6
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.2
N.D.
-0.0
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-0.2
N.D.
+0.5
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.1
N.D.
-0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.2
N.D.
+0.5
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
-0.1
N.D.
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.7
N.D.
+0.9
+0.2
growth on ricinoleic acid
YNB Glucose
-0.2
-1.1
N.D.
+1.1
+0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.7
N.D.
+1.0
+0.1
auxotrophy
Dropout Complete
-0.3
+0.1
N.D.
+0.7
-0.2
auxotrophy
YNB Glucose
+0.2
-0.7
N.D.
+0.9
+0.2
growth on oleic acid
YNB Glucose
-0.2
-0.1
N.D.
+0.9
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+1.8
N.D.
+0.5
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+1.4
N.D.
-0.0
+0.0
growth on oleic acid
YNB Oleic Acid
+0.1
+0.5
N.D.
+0.8
+0.3
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