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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11152 and 11153 are separated by 406 nucleotides
11153 and 11154 are separated by 280 nucleotides
11154 and 11155 are separated by 138 nucleotides
11155 and 11156 are separated by 2146 nucleotides
mRNA_2784: 11152 - K20241 WDR44, RAB11BP WD repeat-containing protein 44, at 204,617 to 208,124
11152
mRNA_2785: 11153 - ProSiteProfiles-CRIB domain profile.-PS50108, at 208,531 to 209,463
11153
mRNA_2786: 11154 - Hypothetical Protein, at 209,744 to 210,942
11154
mRNA_2787: 11155 - KOG1848 Uncharacterized conserved protein, at 211,081 to 216,177
11155
mRNA_2788: 11156 - HMMPfam-Protein of unknown function (DUF1183)-PF06682, at 218,324 to 218,690
11156
Group
Condition
mRNA
_2784
mRNA
_2785
mRNA
_2786
mRNA
_2787
mRNA
_2788
11152
11153
11154
11155
11156
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.9
-0.0
-0.2
+0.7
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.3
+0.4
+0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
-0.5
+0.0
+0.2
N.D.
growth on ypd
YPD
+0.6
+0.0
-0.3
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.1
+0.2
+0.0
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.1
+0.6
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.1
+0.6
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
+0.4
+0.3
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
-0.0
-0.2
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.0
+0.8
+0.1
N.D.
auxotrophy
Dropout Complete
+0.7
-0.2
-0.1
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.2
+0.6
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.9
+0.2
-0.3
+0.4
N.D.
auxotrophy
YNB Glucose
+0.9
+0.2
-0.3
+0.4
N.D.
growth on oleic acid
YNB Glucose
+0.9
+0.0
-0.2
+0.5
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
+0.2
+0.4
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+1.0
+0.1
-0.1
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.5
+0.5
+0.3
N.D.
growth on oleic acid
YNB Oleic Acid
+0.8
+0.3
-0.1
+0.5
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.9
+0.3
+0.1
+0.7
N.D.
growth on ricinoleic acid
YNB Glucose
+1.1
+0.4
-0.0
+0.6
N.D.
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