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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11157 and 11158 are separated by 195 nucleotides
11158 and 11159 are separated by 161 nucleotides
11159 and 11160 are separated by 296 nucleotides
11160 and 11161 are separated by 28 nucleotides
mRNA_2789: 11157 - Interpro SOCE-associated regulatory factor of calcium homoeostasis, at 218,757 to 219,433
11157
mRNA_2790: 11158 - Hypothetical Protein, at 219,629 to 222,406
11158
mRNA_2791: 11159 - K05544 DUS3 tRNA-dihydrouridine synthase 3, at 222,568 to 225,746
11159
mRNA_2792: 11160 - KOG1502 Flavonol reductase/cinnamoyl-CoA reductase, at 226,043 to 228,012
11160
mRNA_2793: 11161 - KOG3834 Golgi reassembly stacking protein GRASP65, contains PDZ domain, at 228,041 to 229,604
11161
Group
Condition
mRNA
_2789
mRNA
_2790
mRNA
_2791
mRNA
_2792
mRNA
_2793
11157
11158
11159
11160
11161
growth on oleic acid
YNB Oleic Acid
N.D.
-0.3
-0.4
+0.0
+0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
-0.4
+0.0
+0.2
auxotrophy
YNB Glucose
N.D.
-0.1
-0.4
-0.1
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.2
-0.1
+0.0
-0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
+0.0
+0.1
-0.2
auxotrophy
Dropout Complete
N.D.
-0.0
-0.3
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.2
-0.1
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.4
-0.0
+0.2
+0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
-0.2
+0.0
+0.3
growth on oleic acid
YNB Glucose
N.D.
-0.1
-0.2
+0.0
+0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
-0.1
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.2
+0.0
+0.1
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
-0.1
-0.2
+0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
+0.0
-0.0
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.3
-0.1
+0.1
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.0
-0.3
+0.1
+0.4
growth on ypd
YPD
N.D.
-0.3
+0.5
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.3
+0.2
+0.3
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.2
-0.2
+0.0
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
-0.1
-0.0
+0.7
growth on ricinoleic acid
YNB Glucose
N.D.
-0.0
-0.1
+0.1
+0.7
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