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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11159 and 11160 are separated by 296 nucleotides
11160 and 11161 are separated by 28 nucleotides
11161 and 11162 are separated by 430 nucleotides
11162 and 11163 are separated by 363 nucleotides
mRNA_2791: 11159 - K05544 DUS3 tRNA-dihydrouridine synthase 3, at 222,568 to 225,746
11159
mRNA_2792: 11160 - KOG1502 Flavonol reductase/cinnamoyl-CoA reductase, at 226,043 to 228,012
11160
mRNA_2793: 11161 - KOG3834 Golgi reassembly stacking protein GRASP65, contains PDZ domain, at 228,041 to 229,604
11161
mRNA_2794: 11162 - BLAST protein FAM72A [Rattus norvegicus], at 230,035 to 232,978
11162
mRNA_2795: 11163 - SUPERFAMILY--SSF56112, at 233,342 to 236,388
11163
Group
Condition
mRNA
_2791
mRNA
_2792
mRNA
_2793
mRNA
_2794
mRNA
_2795
11159
11160
11161
11162
11163
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.0
+0.2
+0.0
-0.7
auxotrophy
YNB Glucose
-0.4
-0.1
+0.3
+0.3
-0.7
auxotrophy
Dropout Complete
-0.3
-0.1
+0.3
+0.1
-0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.0
+0.3
+0.1
-0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
+0.1
+0.1
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.1
+0.4
+0.2
-0.6
growth on oleic acid
YNB Oleic Acid
-0.4
+0.0
+0.2
+0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.0
-0.0
+0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.0
-0.3
+0.1
+0.2
growth on oleic acid
YNB Glucose
-0.2
+0.0
+0.4
-0.0
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.1
-0.2
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.2
+0.1
-0.2
+0.3
growth on ricinoleic acid
YNB Glucose
-0.1
+0.1
+0.7
+0.1
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.2
+0.3
+0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.0
+0.5
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.3
+0.1
+0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.2
+0.4
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.1
+0.3
-0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.0
+0.7
+0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.1
+0.6
+0.1
-0.0
growth on ypd
YPD
+0.5
+0.2
+0.0
+0.1
+0.0
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