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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11161 and 11162 are separated by 430 nucleotides
11162 and 11163 are separated by 363 nucleotides
11163 and 11164 are separated by 311 nucleotides
11164 and 11165 are separated by 241 nucleotides
mRNA_2793: 11161 - KOG3834 Golgi reassembly stacking protein GRASP65, contains PDZ domain, at 228,041 to 229,604
11161
mRNA_2794: 11162 - BLAST protein FAM72A [Rattus norvegicus], at 230,035 to 232,978
11162
mRNA_2795: 11163 - SUPERFAMILY--SSF56112, at 233,342 to 236,388
11163
mRNA_2796: 11164 - K08286 E2.7.11.- protein-serine/threonine kinase, at 236,700 to 240,335
11164
mRNA_2797: 11165 - HMMPfam-CBP4-PF07960, at 240,577 to 240,997
11165
Group
Condition
mRNA
_2793
mRNA
_2794
mRNA
_2795
mRNA
_2796
mRNA
_2797
11161
11162
11163
11164
11165
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.1
+0.2
-1.5
-2.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.1
-0.2
-1.3
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.3
+0.1
-0.9
-1.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.0
-0.1
-0.7
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.1
-0.6
-0.1
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
+0.1
-0.0
-2.1
+0.7
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
-0.4
-0.1
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.7
+0.1
-0.2
+0.5
-1.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.1
-0.2
+0.2
-0.8
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.0
-0.7
-0.2
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.2
+0.0
+0.2
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.2
+0.3
+0.9
-0.9
auxotrophy
YNB Glucose
+0.3
+0.3
-0.7
+0.4
-0.1
auxotrophy
Dropout Complete
+0.3
+0.1
-0.5
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.1
+0.2
+0.7
-0.2
growth on ypd
YPD
+0.0
+0.1
+0.0
+0.5
+0.4
growth on oleic acid
YNB Glucose
+0.4
-0.0
-0.1
+1.5
-0.1
growth on oleic acid
YNB Oleic Acid
+0.2
+0.1
-0.0
+2.7
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
+0.3
-0.2
+3.5
-1.8
growth on ricinoleic acid
YNB Glucose
+0.7
+0.1
-0.5
+2.8
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.2
-0.6
+4.1
-0.9
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