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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11164 and 11165 are separated by 241 nucleotides
11165 and 11166 are separated by 328 nucleotides
11166 and 11167 are separated by 238 nucleotides
11167 and 11168 are separated by 479 nucleotides
mRNA_2796: 11164 - K08286 E2.7.11.- protein-serine/threonine kinase, at 236,700 to 240,335
11164
mRNA_2797: 11165 - HMMPfam-CBP4-PF07960, at 240,577 to 240,997
11165
mRNA_2798: 11166 - K03537 POP5 ribonuclease P/MRP protein subunit POP5, at 241,326 to 242,097
11166
mRNA_2799: 11167 - K01897 ACSL, fadD long-chain acyl-CoA synthetase, at 242,336 to 245,006
11167
mRNA_2800: 11168 - SUPERFAMILY--SSF52047, at 245,486 to 250,213
11168
Group
Condition
mRNA
_2796
mRNA
_2797
mRNA
_2798
mRNA
_2799
mRNA
_2800
11164
11165
11166
11167
11168
ypd buoyancy
40 hrs No Buoyancy Separation
-1.5
-2.1
-0.3
-0.4
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
-1.8
-1.7
-0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.9
-1.1
-0.4
+0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.1
+0.7
-0.6
-0.2
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.7
-0.3
-0.6
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.3
-0.5
+0.2
+0.1
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.4
-0.1
-0.3
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.8
+0.5
+0.0
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.6
+1.1
-0.3
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.4
+0.6
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
-0.2
+0.1
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.9
-0.9
+0.8
-0.1
-0.1
growth on ypd
YPD
+0.5
+0.4
+0.3
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.3
+1.2
-0.4
+0.0
auxotrophy
YNB Glucose
+0.4
-0.1
+0.8
-0.1
+0.1
growth on oleic acid
YNB Glucose
+1.5
-0.1
-0.1
-0.2
-0.0
auxotrophy
Dropout Complete
+0.1
+0.4
+0.9
-0.0
+0.1
growth on ricinoleic acid
YNB Glucose
+2.8
-0.5
+0.0
-0.3
-0.0
growth on oleic acid
YNB Oleic Acid
+2.7
-0.6
-0.3
+0.4
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+3.5
-1.8
+0.5
+0.0
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+4.1
-0.9
-0.2
-0.3
-0.1
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