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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11167 and 11168 are separated by 479 nucleotides
11168 and 11169 are separated by 343 nucleotides
11169 and 11170 are separated by 21 nucleotides
11170 and 11171 are separated by 176 nucleotides
mRNA_2799: 11167 - K01897 ACSL, fadD long-chain acyl-CoA synthetase, at 242,336 to 245,006
11167
mRNA_2800: 11168 - SUPERFAMILY--SSF52047, at 245,486 to 250,213
11168
mRNA_2801: 11169 - Hypothetical Protein, at 250,557 to 251,555
11169
mRNA_2802: 11170 - K11309 RTT109, KAT11 regulator of Ty1 transposition protein 109, at 251,577 to 253,280
11170
mRNA_2803: 11171 - K01301 NAALAD N-acetylated-alpha-linked acidic dipeptidase, at 253,457 to 256,700
11171
Group
Condition
mRNA
_2799
mRNA
_2800
mRNA
_2801
mRNA
_2802
mRNA
_2803
11167
11168
11169
11170
11171
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.1
-0.6
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
-0.3
-0.0
-0.4
N.D.
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
+0.2
+0.1
N.D.
-0.8
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.0
-0.2
N.D.
-0.2
auxotrophy
YNB Glucose
-0.1
+0.1
-0.4
N.D.
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.1
-0.4
N.D.
-0.3
growth on ypd
YPD
-0.2
-0.1
+0.2
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.1
-0.1
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.0
-0.4
N.D.
-0.1
auxotrophy
Dropout Complete
-0.0
+0.1
-0.6
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.1
-0.3
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.1
-0.2
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.0
-0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.0
-0.1
N.D.
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.0
-0.1
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.0
-0.2
N.D.
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.0
-0.2
N.D.
+0.2
growth on oleic acid
YNB Glucose
-0.2
-0.0
+0.0
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.1
-0.0
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
+0.4
+0.0
-0.2
N.D.
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.1
+0.0
N.D.
+0.2
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