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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11172 and 11173 are separated by 373 nucleotides
11173 and 11174 are separated by 168 nucleotides
11174 and 11175 are separated by 2199 nucleotides
11175 and 11176 are separated by 334 nucleotides
mRNA_2804: 11172 - K10808 RRM2 ribonucleoside-diphosphate reductase subunit M2, at 257,436 to 258,912
11172
mRNA_2805: 11173 - KOG0128 RNA-binding protein SART3 (RRM superfamily), at 259,286 to 263,641
11173
mRNA_2806: 11174 - Hypothetical Protein, at 263,810 to 265,112
11174
mRNA_2807: 11175 - K11485 MTF2, PCL2 polycomb-like protein 2, at 267,312 to 269,571
11175
mRNA_2808: 11176 - KOG4539 Uncharacterized conserved protein, at 269,906 to 271,117
11176
Group
Condition
mRNA
_2804
mRNA
_2805
mRNA
_2806
mRNA
_2807
mRNA
_2808
11172
11173
11174
11175
11176
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.3
N.D.
-0.2
-0.4
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
N.D.
-0.1
-0.3
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
+0.2
-1.6
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
-0.5
-0.5
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
N.D.
-0.2
-0.4
+0.2
growth on ypd
YPD
-0.2
N.D.
-0.1
-0.1
-0.1
auxotrophy
Dropout Complete
-0.0
N.D.
-0.5
-0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
N.D.
-0.0
-0.2
+0.4
auxotrophy
YNB Glucose
-0.0
N.D.
-0.3
-0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
-0.4
+0.0
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
+0.0
-1.1
+0.6
growth on ricinoleic acid
YNB Glucose
-0.2
N.D.
+0.0
-0.5
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
N.D.
+0.3
-0.2
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
N.D.
+0.3
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
-0.1
-0.0
-0.0
growth on oleic acid
YNB Glucose
+0.3
N.D.
+0.1
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
N.D.
+0.0
-0.4
+0.2
growth on oleic acid
YNB Oleic Acid
-0.2
N.D.
+0.2
+0.8
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.2
N.D.
+0.1
-0.2
+0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
-0.0
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
+0.0
+0.5
+0.0
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