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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11176 and 11177 are separated by 434 nucleotides
11177 and 11178 are separated by 185 nucleotides
11178 and 11179 are separated by 121 nucleotides
11179 and 11180 are separated by 682 nucleotides
mRNA_2808: 11176 - KOG4539 Uncharacterized conserved protein, at 269,906 to 271,117
11176
mRNA_2809: 11177 - K08596 SENP7 sentrin-specific protease 7, at 271,552 to 278,521
11177
mRNA_2810: 11178 - K00026 MDH2 malate dehydrogenase, at 278,707 to 280,370
11178
mRNA_2811: 11179 - Hypothetical Protein, at 280,492 to 281,442
11179
mRNA_2812: 11180 - Hypothetical Protein, at 282,125 to 283,432
11180
Group
Condition
mRNA
_2808
mRNA
_2809
mRNA
_2810
mRNA
_2811
mRNA
_2812
11176
11177
11178
11179
11180
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.1
N.D.
-0.8
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.3
N.D.
-1.2
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.3
N.D.
-0.5
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.5
N.D.
-1.3
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
+0.2
N.D.
-0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.2
N.D.
-0.4
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.3
N.D.
-0.3
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.6
-0.1
N.D.
-0.6
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.4
N.D.
+0.0
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.2
N.D.
-0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.0
N.D.
-0.2
-0.1
growth on oleic acid
YNB Oleic Acid
-0.4
+0.2
N.D.
+0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.1
N.D.
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.3
N.D.
-0.4
+0.1
growth on ypd
YPD
-0.1
+0.4
N.D.
-0.0
+0.1
auxotrophy
YNB Glucose
+0.1
-0.3
N.D.
+0.3
+0.4
growth on oleic acid
YNB Glucose
-0.3
+0.4
N.D.
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.6
N.D.
+0.1
-0.1
growth on ricinoleic acid
YNB Glucose
+0.4
+0.1
N.D.
+0.2
+0.0
auxotrophy
Dropout Complete
+0.2
-0.2
N.D.
+0.6
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.7
N.D.
+0.0
-0.0
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