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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11177 and 11178 are separated by 185 nucleotides
11178 and 11179 are separated by 121 nucleotides
11179 and 11180 are separated by 682 nucleotides
11180 and 11181 are separated by 479 nucleotides
mRNA_2809: 11177 - K08596 SENP7 sentrin-specific protease 7, at 271,552 to 278,521
11177
mRNA_2810: 11178 - K00026 MDH2 malate dehydrogenase, at 278,707 to 280,370
11178
mRNA_2811: 11179 - Hypothetical Protein, at 280,492 to 281,442
11179
mRNA_2812: 11180 - Hypothetical Protein, at 282,125 to 283,432
11180
mRNA_2813: 11181 - SUPERFAMILY--SSF52047, at 283,912 to 285,183
11181
Group
Condition
mRNA
_2809
mRNA
_2810
mRNA
_2811
mRNA
_2812
mRNA
_2813
11177
11178
11179
11180
11181
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
N.D.
-1.2
-0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
N.D.
-0.8
+0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
-0.6
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
N.D.
-1.3
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
N.D.
-0.4
-0.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.3
N.D.
-0.3
+0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
N.D.
-0.5
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
-0.1
+0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
N.D.
-0.2
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
N.D.
-0.1
+0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
N.D.
+0.0
+0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
N.D.
-0.2
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
N.D.
-0.4
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
+0.2
+0.0
N.D.
auxotrophy
YNB Glucose
-0.3
N.D.
+0.3
+0.4
N.D.
growth on ypd
YPD
+0.4
N.D.
-0.0
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
+0.2
N.D.
+0.2
+0.1
N.D.
auxotrophy
Dropout Complete
-0.2
N.D.
+0.6
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
N.D.
+0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.7
N.D.
+0.0
-0.0
N.D.
growth on oleic acid
YNB Glucose
+0.4
N.D.
+0.2
+0.3
N.D.
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