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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11179 and 11180 are separated by 682 nucleotides
11180 and 11181 are separated by 479 nucleotides
11181 and 11182 are separated by 343 nucleotides
11182 and 11183 are separated by 441 nucleotides
mRNA_2811: 11179 - Hypothetical Protein, at 280,492 to 281,442
11179
mRNA_2812: 11180 - Hypothetical Protein, at 282,125 to 283,432
11180
mRNA_2813: 11181 - SUPERFAMILY--SSF52047, at 283,912 to 285,183
11181
mRNA_2814: 11182 - Hypothetical Protein, at 285,527 to 286,439
11182
mRNA_2815: 11183 - K09699 DBT, bkdB 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase), at 286,881 to 288,952
11183
Group
Condition
mRNA
_2811
mRNA
_2812
mRNA
_2813
mRNA
_2814
mRNA
_2815
11179
11180
11181
11182
11183
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
+0.2
N.D.
N.D.
-3.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.2
-0.3
N.D.
N.D.
-2.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.0
N.D.
N.D.
-1.8
ypd buoyancy
40 hrs Low Buoyancy
-0.6
-0.1
N.D.
N.D.
-0.5
growth on oleic acid
YNB Oleic Acid
+0.2
+0.1
N.D.
N.D.
-1.3
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
N.D.
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.1
N.D.
N.D.
-0.2
growth on ypd
YPD
-0.0
+0.1
N.D.
N.D.
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
-0.1
N.D.
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.3
+0.1
N.D.
N.D.
+0.8
growth on ricinoleic acid
YNB Glucose
+0.2
+0.0
N.D.
N.D.
-0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.2
N.D.
N.D.
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.0
N.D.
N.D.
+0.1
auxotrophy
YNB Glucose
+0.3
+0.4
N.D.
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.1
N.D.
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.0
N.D.
N.D.
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.1
N.D.
N.D.
+0.6
growth on oleic acid
YNB Glucose
+0.2
+0.3
N.D.
N.D.
-0.1
auxotrophy
Dropout Complete
+0.6
+0.2
N.D.
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.1
N.D.
N.D.
+0.8
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.3
N.D.
N.D.
+0.6
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