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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11181 and 11182 are separated by 343 nucleotides
11182 and 11183 are separated by 441 nucleotides
11183 and 11184 are separated by 305 nucleotides
11184 and 11185 are separated by 293 nucleotides
mRNA_2813: 11181 - SUPERFAMILY--SSF52047, at 283,912 to 285,183
11181
mRNA_2814: 11182 - Hypothetical Protein, at 285,527 to 286,439
11182
mRNA_2815: 11183 - K09699 DBT, bkdB 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase), at 286,881 to 288,952
11183
mRNA_2816: 11184 - HMMPfam-linker histone H1 and H5 family-PF00538,ProSiteProfiles-Linker histone H1/H5 globular (H15) domain profile.-PS51504,SMART-Domain in histone families 1 and 5-SM00526,SUPERFAMILY--SSF46785, at 289,258 to 289,809
11184
mRNA_2817: 11185 - KOG2946 Uncharacterized conserved protein, at 290,103 to 291,394
11185
Group
Condition
mRNA
_2813
mRNA
_2814
mRNA
_2815
mRNA
_2816
mRNA
_2817
11181
11182
11183
11184
11185
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-3.6
+1.0
-1.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-1.8
+0.4
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-2.3
+0.5
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-1.3
-0.1
+0.7
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.1
-0.1
-0.6
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.3
-0.2
-0.1
auxotrophy
Dropout Complete
N.D.
N.D.
-0.0
-0.1
-0.4
auxotrophy
YNB Glucose
N.D.
N.D.
-0.6
+0.3
+0.0
growth on ypd
YPD
N.D.
N.D.
-0.4
+0.3
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.5
+0.6
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.2
+0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.4
+0.2
+0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.5
+0.1
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.6
-0.1
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.2
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.2
+0.5
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.6
+0.3
-0.3
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.1
+0.1
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.5
+0.4
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.8
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.8
+0.6
+0.4
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