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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11183 and 11184 are separated by 305 nucleotides
11184 and 11185 are separated by 293 nucleotides
11185 and 11186 are separated by 685 nucleotides
11186 and 11187 are separated by 223 nucleotides
mRNA_2815: 11183 - K09699 DBT, bkdB 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase), at 286,881 to 288,952
11183
mRNA_2816: 11184 - HMMPfam-linker histone H1 and H5 family-PF00538,ProSiteProfiles-Linker histone H1/H5 globular (H15) domain profile.-PS51504,SMART-Domain in histone families 1 and 5-SM00526,SUPERFAMILY--SSF46785, at 289,258 to 289,809
11184
mRNA_2817: 11185 - KOG2946 Uncharacterized conserved protein, at 290,103 to 291,394
11185
mRNA_2818: 11186 - K02178 BUB1 checkpoint serine/threonine-protein kinase, at 292,080 to 296,876
11186
mRNA_2819: 11187 - HMMPfam-linker histone H1 and H5 family-PF00538,ProSiteProfiles-Linker histone H1/H5 globular (H15) domain profile.-PS51504,SUPERFAMILY--SSF46785, at 297,100 to 297,771
11187
Group
Condition
mRNA
_2815
mRNA
_2816
mRNA
_2817
mRNA
_2818
mRNA
_2819
11183
11184
11185
11186
11187
ypd buoyancy
40 hrs No Buoyancy Separation
-3.6
+1.0
-1.9
+0.7
+0.8
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.3
+0.5
+0.2
-0.4
+0.7
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.4
-0.1
-1.5
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
+0.3
-0.3
-1.4
-0.0
auxotrophy
Dropout Complete
-0.0
-0.1
-0.4
-0.3
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.2
-0.1
-0.0
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.8
+0.4
-0.2
+0.3
+0.8
growth on oleic acid
YNB Oleic Acid
-1.3
-0.1
+0.7
+0.1
+0.2
auxotrophy
YNB Glucose
-0.6
+0.3
+0.0
-0.3
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
-0.6
+0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
-0.1
-0.0
-1.2
+0.4
growth on ypd
YPD
-0.4
+0.3
-0.1
-0.3
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.1
+0.2
-0.6
+0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.4
+0.2
+0.3
-0.2
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.5
+0.1
+0.5
-0.1
+0.1
growth on ricinoleic acid
YNB Glucose
-0.5
+0.6
-0.1
-0.2
+0.5
growth on oleic acid
YNB Glucose
-0.1
+0.1
+0.6
-0.4
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
+0.4
+0.4
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.5
-0.1
+0.4
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.8
+0.6
+0.4
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.8
+0.3
+0.2
+0.2
+0.2
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