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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11184 and 11185 are separated by 293 nucleotides
11185 and 11186 are separated by 685 nucleotides
11186 and 11187 are separated by 223 nucleotides
11187 and 11188 are separated by 188 nucleotides
mRNA_2816: 11184 - HMMPfam-linker histone H1 and H5 family-PF00538,ProSiteProfiles-Linker histone H1/H5 globular (H15) domain profile.-PS51504,SMART-Domain in histone families 1 and 5-SM00526,SUPERFAMILY--SSF46785, at 289,258 to 289,809
11184
mRNA_2817: 11185 - KOG2946 Uncharacterized conserved protein, at 290,103 to 291,394
11185
mRNA_2818: 11186 - K02178 BUB1 checkpoint serine/threonine-protein kinase, at 292,080 to 296,876
11186
mRNA_2819: 11187 - HMMPfam-linker histone H1 and H5 family-PF00538,ProSiteProfiles-Linker histone H1/H5 globular (H15) domain profile.-PS51504,SUPERFAMILY--SSF46785, at 297,100 to 297,771
11187
mRNA_2820: 11188 - HMMPfam-2-oxoacid dehydrogenases acyltransferase (catalytic domain)-PF00198,HMMPfam-Biotin-requiring enzyme-PF00364,HMMPfam-e3 binding domain-PF02817,SUPERFAMILY--SSF47005,SUPERFAMILY--SSF51230,SUPERFAMILY--SSF52777, at 297,960 to 299,453
11188
Group
Condition
mRNA
_2816
mRNA
_2817
mRNA
_2818
mRNA
_2819
mRNA
_2820
11184
11185
11186
11187
11188
auxotrophy
Dropout Complete
-0.1
-0.4
-0.3
-0.1
-2.3
auxotrophy
YNB Glucose
+0.3
+0.0
-0.3
+0.2
-2.8
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.2
-0.6
+0.4
-2.2
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
-0.0
-0.1
-1.5
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.6
+0.2
+0.1
-1.2
ypd buoyancy
40 hrs No Buoyancy Separation
+1.0
-1.9
+0.7
+0.8
-1.3
growth on ricinoleic acid
YNB Glucose
+0.6
-0.1
-0.2
+0.5
-1.5
growth on ypd
YPD
+0.3
-0.1
-0.3
+0.3
-0.9
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.0
-1.2
+0.4
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.3
-0.2
+0.2
-1.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.3
-1.4
-0.0
+1.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.5
-0.1
+0.1
-1.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.2
+0.3
+0.8
-1.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
+0.4
-0.0
-0.1
-0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
+0.4
-0.4
+0.1
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
+0.2
-0.4
+0.7
-0.9
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.1
-1.5
-0.1
+1.8
growth on oleic acid
YNB Glucose
+0.1
+0.6
-0.4
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.2
+0.2
+0.2
-0.2
growth on oleic acid
YNB Oleic Acid
-0.1
+0.7
+0.1
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
-0.1
+0.4
+0.5
+0.7
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