Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 11188 and 11189 are separated by 1019 nucleotides11189 and 11190 are separated by 343 nucleotides11190 and 11191 are separated by 479 nucleotides11191 and 11192 are separated by 104 nucleotides mRNA_2820: 11188 - HMMPfam-2-oxoacid dehydrogenases acyltransferase (catalytic domain)-PF00198,HMMPfam-Biotin-requiring enzyme-PF00364,HMMPfam-e3 binding domain-PF02817,SUPERFAMILY--SSF47005,SUPERFAMILY--SSF51230,SUPERFAMILY--SSF52777, at 297,960 to 299,453 11188 mRNA_2821: 11189 - BLAST DNA polymerase gamma [Kalmanozyma brasiliensis GH..., at 300,473 to 301,385 11189 mRNA_2822: 11190 - SUPERFAMILY--SSF52047, at 301,729 to 303,000 11190 mRNA_2823: 11191 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 303,480 to 304,770 11191 mRNA_2824: 11192 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 304,875 to 305,755 11192
Group Condition mRNA_2820 mRNA_2821 mRNA_2822 mRNA_2823 mRNA_2824
11188 11189 11190 11191 11192
growth on ricinoleic acid YNB Methylricinoleic Acid -1.4 N.D. -0.4 -0.0 -0.4
ypd buoyancy 40 hrs No Buoyancy Separation -1.3 N.D. +0.3 +0.1 -1.0
growth on ricinoleic acid YNB Ricinoleic Acid -0.9 N.D. -0.6 -0.0 -0.2
facs on lipid accumulation Sorted Low BODIPY Gate +0.2 N.D. -1.3 +0.2 -0.9
growth on ricinoleic acid YNB Glucose -1.5 N.D. +0.1 -0.0 -0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.6 N.D. +0.0 -0.2 -0.7
auxotrophy YNB Glucose -2.8 N.D. +1.4 +0.1 -0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.7 N.D. -0.8 -0.1 +0.3
growth on oleic acid YNB Glucose -0.1 N.D. -0.8 +0.1 -0.3
auxotrophy Dropout Complete -2.3 N.D. +1.4 +0.2 -0.3
auxotrophy YNB Glucose 75mM Methionine -2.2 N.D. +1.1 +0.1 +0.1
ypd buoyancy 40 hrs Median Buoyancy -1.1 N.D. +1.0 -0.1 -0.3
ypd buoyancy 40 hrs High Buoyancy -1.2 N.D. +1.5 -0.1 -0.6
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.2 N.D. -0.2 -0.0 -0.1
ypd buoyancy 40 hrs Low Buoyancy -1.0 N.D. +0.9 -0.1 -0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.7 N.D. -0.4 -0.1 -0.0
growth on ypd YPD -0.9 N.D. +1.9 +0.0 -0.2
auxotrophy YNB Glucose 75mM Arginine -1.5 N.D. +2.3 +0.1 +0.0
growth on oleic acid YNB Oleic Acid -0.0 N.D. +1.3 +0.1 -0.4
facs on lipid accumulation Sorted High BODIPY Gate +1.0 N.D. -0.3 +0.3 +0.6
facs on lipid accumulation Sorted No BODIPY Gate +1.8 N.D. +0.2 +0.2 +0.1
remove
mRNA_2820
plot
remove
mRNA_2821
plot
remove
mRNA_2822
remove
mRNA_2823
plot
remove
mRNA_2824
plot