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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11188 and 11189 are separated by 1019 nucleotides
11189 and 11190 are separated by 343 nucleotides
11190 and 11191 are separated by 479 nucleotides
11191 and 11192 are separated by 104 nucleotides
mRNA_2820: 11188 - HMMPfam-2-oxoacid dehydrogenases acyltransferase (catalytic domain)-PF00198,HMMPfam-Biotin-requiring enzyme-PF00364,HMMPfam-e3 binding domain-PF02817,SUPERFAMILY--SSF47005,SUPERFAMILY--SSF51230,SUPERFAMILY--SSF52777, at 297,960 to 299,453
11188
mRNA_2821: 11189 - BLAST DNA polymerase gamma [Kalmanozyma brasiliensis GH..., at 300,473 to 301,385
11189
mRNA_2822: 11190 - SUPERFAMILY--SSF52047, at 301,729 to 303,000
11190
mRNA_2823: 11191 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 303,480 to 304,770
11191
mRNA_2824: 11192 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 304,875 to 305,755
11192
Group
Condition
mRNA
_2820
mRNA
_2821
mRNA
_2822
mRNA
_2823
mRNA
_2824
11188
11189
11190
11191
11192
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.4
N.D.
-0.4
-0.0
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-1.3
N.D.
+0.3
+0.1
-1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.9
N.D.
-0.6
-0.0
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
N.D.
-1.3
+0.2
-0.9
growth on ricinoleic acid
YNB Glucose
-1.5
N.D.
+0.1
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
N.D.
+0.0
-0.2
-0.7
auxotrophy
YNB Glucose
-2.8
N.D.
+1.4
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
N.D.
-0.8
-0.1
+0.3
growth on oleic acid
YNB Glucose
-0.1
N.D.
-0.8
+0.1
-0.3
auxotrophy
Dropout Complete
-2.3
N.D.
+1.4
+0.2
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-2.2
N.D.
+1.1
+0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-1.1
N.D.
+1.0
-0.1
-0.3
ypd buoyancy
40 hrs High Buoyancy
-1.2
N.D.
+1.5
-0.1
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
N.D.
-0.2
-0.0
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-1.0
N.D.
+0.9
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.7
N.D.
-0.4
-0.1
-0.0
growth on ypd
YPD
-0.9
N.D.
+1.9
+0.0
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-1.5
N.D.
+2.3
+0.1
+0.0
growth on oleic acid
YNB Oleic Acid
-0.0
N.D.
+1.3
+0.1
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+1.0
N.D.
-0.3
+0.3
+0.6
facs on lipid accumulation
Sorted No BODIPY Gate
+1.8
N.D.
+0.2
+0.2
+0.1
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