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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11191 and 11192 are separated by 104 nucleotides
11192 and 11193 are separated by 1124 nucleotides
11193 and 11194 are separated by 233 nucleotides
11194 and 11195 are separated by 65 nucleotides
mRNA_2823: 11191 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 303,480 to 304,770
11191
mRNA_2824: 11192 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 304,875 to 305,755
11192
mRNA_2825: 11193 - HMMPfam-F-box-like-PF12937, at 306,880 to 308,238
11193
mRNA_2826: 11194 - HMMPfam-Methyltransferase domain-PF13489,SUPERFAMILY--SSF53335, at 308,472 to 309,591
11194
mRNA_2827: 11195 - Hypothetical Protein, at 309,657 to 312,569
11195
Group
Condition
mRNA
_2823
mRNA
_2824
mRNA
_2825
mRNA
_2826
mRNA
_2827
11191
11192
11193
11194
11195
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-1.0
-0.0
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.0
-0.9
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.6
+0.0
-0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.9
-0.2
+0.3
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
-0.4
-0.2
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.7
+0.9
-0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.4
+0.0
+0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.3
+0.0
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.2
+0.0
+0.0
N.D.
growth on oleic acid
YNB Glucose
+0.1
-0.3
+0.1
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.1
+0.1
-0.0
N.D.
growth on ricinoleic acid
YNB Glucose
-0.0
-0.2
+0.1
+0.2
N.D.
auxotrophy
Dropout Complete
+0.2
-0.3
+0.4
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.3
-0.1
+0.1
N.D.
growth on ypd
YPD
+0.0
-0.2
+0.2
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
+0.2
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.0
+0.2
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.1
-0.0
+0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.2
+0.2
+0.4
N.D.
auxotrophy
YNB Glucose
+0.1
-0.0
+0.3
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.6
-0.1
-0.2
N.D.
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