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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11193 and 11194 are separated by 233 nucleotides
11194 and 11195 are separated by 65 nucleotides
11195 and 11196 are separated by 463 nucleotides
11196 and 11197 are separated by 129 nucleotides
mRNA_2825: 11193 - HMMPfam-F-box-like-PF12937, at 306,880 to 308,238
11193
mRNA_2826: 11194 - HMMPfam-Methyltransferase domain-PF13489,SUPERFAMILY--SSF53335, at 308,472 to 309,591
11194
mRNA_2827: 11195 - Hypothetical Protein, at 309,657 to 312,569
11195
mRNA_2828: 11196 - Hypothetical Protein, at 313,033 to 313,687
11196
mRNA_2829: 11197 - Hypothetical Protein, at 313,817 to 315,093
11197
Group
Condition
mRNA
_2825
mRNA
_2826
mRNA
_2827
mRNA
_2828
mRNA
_2829
11193
11194
11195
11196
11197
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.2
N.D.
-0.3
-0.3
growth on oleic acid
YNB Oleic Acid
-0.2
-0.0
N.D.
-0.4
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-0.2
N.D.
+0.5
-1.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.1
N.D.
-0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.0
N.D.
+0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.2
N.D.
+0.6
-0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.1
N.D.
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.9
+0.1
N.D.
+1.0
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.0
N.D.
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.9
-0.2
N.D.
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.0
N.D.
+0.3
+0.0
growth on oleic acid
YNB Glucose
+0.1
-0.0
N.D.
+0.3
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.1
N.D.
+0.6
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.2
N.D.
+0.3
+0.2
growth on ypd
YPD
+0.2
+0.2
N.D.
-0.3
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.4
N.D.
+0.4
-0.2
auxotrophy
Dropout Complete
+0.4
-0.2
N.D.
+0.1
+0.4
auxotrophy
YNB Glucose
+0.3
+0.1
N.D.
+0.4
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.0
N.D.
+1.0
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.3
N.D.
+0.8
+0.3
growth on ricinoleic acid
YNB Glucose
+0.1
+0.2
N.D.
+1.0
+0.3
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