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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11196 and 11197 are separated by 129 nucleotides
11197 and 11198 are separated by 234 nucleotides
11198 and 11199 are separated by 314 nucleotides
11199 and 11200 are separated by 403 nucleotides
mRNA_2828: 11196 - Hypothetical Protein, at 313,033 to 313,687
11196
mRNA_2829: 11197 - Hypothetical Protein, at 313,817 to 315,093
11197
mRNA_2830: 11198 - BLAST 60S ribosomal protein L33-A [Wallemia ichthyophag..., at 315,328 to 317,739
11198
mRNA_2831: 11199 - HMMPfam-short chain dehydrogenase-PF00106,PRINTS-Glucose/ribitol dehydrogenase family signature-PR00081,SMART--SM00822,SUPERFAMILY--SSF51735, at 318,054 to 319,183
11199
mRNA_2832: 11200 - KOG1611 Predicted short chain-type dehydrogenase, at 319,587 to 320,810
11200
Group
Condition
mRNA
_2828
mRNA
_2829
mRNA
_2830
mRNA
_2831
mRNA
_2832
11196
11197
11198
11199
11200
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
-1.0
-0.1
-0.9
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
+0.1
-0.3
+0.3
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.3
+0.2
-0.3
+0.2
growth on oleic acid
YNB Oleic Acid
-0.4
-0.1
+0.1
+0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.2
+0.4
-0.4
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.1
+0.0
+0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.2
+0.3
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.2
-0.0
+0.7
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.6
-0.5
-0.2
+0.0
+0.3
growth on ypd
YPD
-0.3
+0.5
+0.0
+0.1
-0.0
growth on oleic acid
YNB Glucose
+0.3
+0.0
-0.1
+0.1
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.6
-0.2
-0.1
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.0
+0.0
+0.6
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.8
+0.3
+0.0
-0.4
+0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.1
+0.0
+0.6
+0.7
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.2
+0.1
+0.3
+0.5
auxotrophy
YNB Glucose
+0.4
+0.1
+0.1
+0.4
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.0
-0.1
-0.0
+0.8
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.0
+0.1
+0.3
+0.2
+0.5
growth on ricinoleic acid
YNB Glucose
+1.0
+0.3
+0.4
+0.0
+0.5
auxotrophy
Dropout Complete
+0.1
+0.4
+0.2
+0.9
+0.6
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mRNA_2830
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