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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11197 and 11198 are separated by 234 nucleotides
11198 and 11199 are separated by 314 nucleotides
11199 and 11200 are separated by 403 nucleotides
11200 and 11201 are separated by 629 nucleotides
mRNA_2829: 11197 - Hypothetical Protein, at 313,817 to 315,093
11197
mRNA_2830: 11198 - BLAST 60S ribosomal protein L33-A [Wallemia ichthyophag..., at 315,328 to 317,739
11198
mRNA_2831: 11199 - HMMPfam-short chain dehydrogenase-PF00106,PRINTS-Glucose/ribitol dehydrogenase family signature-PR00081,SMART--SM00822,SUPERFAMILY--SSF51735, at 318,054 to 319,183
11199
mRNA_2832: 11200 - KOG1611 Predicted short chain-type dehydrogenase, at 319,587 to 320,810
11200
mRNA_2833: 11201 - KOG0254 Predicted transporter (major facilitator superfamily), at 321,440 to 324,159
11201
Group
Condition
mRNA
_2829
mRNA
_2830
mRNA
_2831
mRNA
_2832
mRNA
_2833
11197
11198
11199
11200
11201
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
-0.1
-0.9
+0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.5
-0.2
+0.0
+0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
+0.2
+0.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.0
+0.1
-0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.3
-0.0
-0.1
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.4
-0.4
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.0
+0.6
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.3
+0.3
-0.3
+0.3
growth on oleic acid
YNB Oleic Acid
-0.1
+0.1
+0.1
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.0
+0.7
-0.1
-0.0
growth on oleic acid
YNB Glucose
+0.0
-0.1
+0.1
+0.3
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.2
-0.3
+0.2
+0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.0
-0.4
+0.4
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.0
+0.8
-0.2
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.1
+0.3
+0.5
-0.3
auxotrophy
YNB Glucose
+0.1
+0.1
+0.4
+0.5
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.3
+0.2
+0.5
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.0
+0.6
+0.7
-0.4
growth on ypd
YPD
+0.5
+0.0
+0.1
-0.0
+0.2
growth on ricinoleic acid
YNB Glucose
+0.3
+0.4
+0.0
+0.5
-0.1
auxotrophy
Dropout Complete
+0.4
+0.2
+0.9
+0.6
-0.3
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