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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11201 and 11202 are separated by 300 nucleotides
11202 and 11203 are separated by 158 nucleotides
11203 and 11204 are separated by 324 nucleotides
11204 and 11205 are separated by 178 nucleotides
mRNA_2833: 11201 - KOG0254 Predicted transporter (major facilitator superfamily), at 321,440 to 324,159
11201
mRNA_2834: 11202 - K01001 ALG7 UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase, at 324,460 to 326,344
11202
mRNA_2835: 11203 - K00022 HADH 3-hydroxyacyl-CoA dehydrogenase, at 326,503 to 328,205
11203
mRNA_2836: 11204 - HMMPfam-Putative zinc finger motif, C2HC5-type-PF06221, at 328,530 to 330,386
11204
mRNA_2837: 11205 - KOG4100 Uncharacterized conserved protein, at 330,565 to 331,429
11205
Group
Condition
mRNA
_2833
mRNA
_2834
mRNA
_2835
mRNA
_2836
mRNA
_2837
11201
11202
11203
11204
11205
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
N.D.
-1.9
+0.1
-0.8
growth on oleic acid
YNB Oleic Acid
+0.0
N.D.
-1.3
-0.1
-0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
N.D.
-1.3
+0.3
-0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
N.D.
-0.6
-0.1
-0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
N.D.
-0.8
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
N.D.
-0.6
-0.3
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.4
N.D.
-0.1
-0.1
-0.2
growth on oleic acid
YNB Glucose
+0.1
N.D.
-0.3
-0.2
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
N.D.
-0.6
-0.2
+0.2
auxotrophy
Dropout Complete
-0.3
N.D.
-0.1
+0.2
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
-0.3
+0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
N.D.
-0.5
-0.1
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
-0.4
+0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
-0.0
-0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.2
N.D.
+0.1
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.3
N.D.
+0.1
+0.1
+0.1
auxotrophy
YNB Glucose
-0.4
N.D.
+0.2
+0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
N.D.
-0.4
+0.4
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
N.D.
-0.0
+0.3
-0.2
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
-0.1
+0.3
+0.2
growth on ypd
YPD
+0.2
N.D.
+0.2
+0.4
+0.5
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