Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 11201 and 11202 are separated by 300 nucleotides11202 and 11203 are separated by 158 nucleotides11203 and 11204 are separated by 324 nucleotides11204 and 11205 are separated by 178 nucleotides mRNA_2833: 11201 - KOG0254 Predicted transporter (major facilitator superfamily), at 321,440 to 324,159 11201 mRNA_2834: 11202 - K01001 ALG7 UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase, at 324,460 to 326,344 11202 mRNA_2835: 11203 - K00022 HADH 3-hydroxyacyl-CoA dehydrogenase, at 326,503 to 328,205 11203 mRNA_2836: 11204 - HMMPfam-Putative zinc finger motif, C2HC5-type-PF06221, at 328,530 to 330,386 11204 mRNA_2837: 11205 - KOG4100 Uncharacterized conserved protein, at 330,565 to 331,429 11205
Group Condition mRNA_2833 mRNA_2834 mRNA_2835 mRNA_2836 mRNA_2837
11201 11202 11203 11204 11205
growth on ricinoleic acid YNB Ricinoleic Acid +0.0 N.D. -1.9 +0.1 -0.8
growth on oleic acid YNB Oleic Acid +0.0 N.D. -1.3 -0.1 -0.8
growth on ricinoleic acid YNB Methylricinoleic Acid -0.3 N.D. -1.3 +0.3 -0.9
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.0 N.D. -0.6 -0.1 -0.7
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.2 N.D. -0.8 -0.2 -0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.3 N.D. -0.6 -0.3 -0.2
auxotrophy YNB Glucose 75mM Arginine -0.4 N.D. -0.1 -0.1 -0.2
growth on oleic acid YNB Glucose +0.1 N.D. -0.3 -0.2 -0.4
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.0 N.D. -0.6 -0.2 +0.2
auxotrophy Dropout Complete -0.3 N.D. -0.1 +0.2 -0.3
ypd buoyancy 40 hrs Low Buoyancy -0.2 N.D. -0.3 +0.2 -0.2
facs on lipid accumulation Sorted Low BODIPY Gate +0.2 N.D. -0.5 -0.1 +0.0
facs on lipid accumulation Sorted No BODIPY Gate +0.1 N.D. -0.4 +0.1 -0.1
ypd buoyancy 40 hrs High Buoyancy -0.1 N.D. -0.0 -0.0 -0.2
ypd buoyancy 40 hrs Median Buoyancy -0.2 N.D. +0.1 -0.1 +0.0
auxotrophy YNB Glucose 75mM Methionine -0.3 N.D. +0.1 +0.1 +0.1
auxotrophy YNB Glucose -0.4 N.D. +0.2 +0.0 +0.1
facs on lipid accumulation Sorted High BODIPY Gate +0.6 N.D. -0.4 +0.4 -0.7
ypd buoyancy 40 hrs No Buoyancy Separation +0.2 N.D. -0.0 +0.3 -0.2
growth on ricinoleic acid YNB Glucose -0.1 N.D. -0.1 +0.3 +0.2
growth on ypd YPD +0.2 N.D. +0.2 +0.4 +0.5
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