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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11204 and 11205 are separated by 178 nucleotides
11205 and 11206 are separated by 469 nucleotides
11206 and 11207 are separated by 978 nucleotides
11207 and 11208 are separated by 301 nucleotides
mRNA_2836: 11204 - HMMPfam-Putative zinc finger motif, C2HC5-type-PF06221, at 328,530 to 330,386
11204
mRNA_2837: 11205 - KOG4100 Uncharacterized conserved protein, at 330,565 to 331,429
11205
mRNA_2838: 11206 - K02934 RP-L6e, RPL6 large subunit ribosomal protein L6e, at 331,899 to 332,766
11206
mRNA_2839: 11207 - K01427 URE urease, at 333,745 to 337,824
11207
mRNA_2840: 11208 - KOG4178 Soluble epoxide hydrolase, at 338,126 to 339,492
11208
Group
Condition
mRNA
_2836
mRNA
_2837
mRNA
_2838
mRNA
_2839
mRNA
_2840
11204
11205
11206
11207
11208
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.7
N.D.
-0.1
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.2
N.D.
+0.2
-0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.9
N.D.
-0.1
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.2
N.D.
+0.1
-0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.1
N.D.
+0.2
-0.8
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.1
N.D.
-0.2
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.2
N.D.
-0.1
-0.7
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.2
N.D.
-0.0
-0.4
growth on oleic acid
YNB Oleic Acid
-0.1
-0.8
N.D.
+0.1
+0.3
growth on oleic acid
YNB Glucose
-0.2
-0.4
N.D.
-0.0
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
N.D.
+0.1
-0.8
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
-0.7
N.D.
-0.5
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.2
N.D.
+0.3
-0.8
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.0
N.D.
-0.0
-0.3
auxotrophy
Dropout Complete
+0.2
-0.3
N.D.
+0.0
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.8
N.D.
+0.0
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.0
N.D.
-0.0
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.2
N.D.
+0.1
-0.0
auxotrophy
YNB Glucose
+0.0
+0.1
N.D.
+0.1
+0.0
growth on ricinoleic acid
YNB Glucose
+0.3
+0.2
N.D.
-0.2
+0.5
growth on ypd
YPD
+0.4
+0.5
N.D.
+0.2
+0.1
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