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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11205 and 11206 are separated by 469 nucleotides
11206 and 11207 are separated by 978 nucleotides
11207 and 11208 are separated by 301 nucleotides
11208 and 11209 are separated by 358 nucleotides
mRNA_2837: 11205 - KOG4100 Uncharacterized conserved protein, at 330,565 to 331,429
11205
mRNA_2838: 11206 - K02934 RP-L6e, RPL6 large subunit ribosomal protein L6e, at 331,899 to 332,766
11206
mRNA_2839: 11207 - K01427 URE urease, at 333,745 to 337,824
11207
mRNA_2840: 11208 - KOG4178 Soluble epoxide hydrolase, at 338,126 to 339,492
11208
mRNA_2841: 11209 - KOG3290 Peroxisomal phytanoyl-CoA hydroxylase, at 339,851 to 340,983
11209
Group
Condition
mRNA
_2837
mRNA
_2838
mRNA
_2839
mRNA
_2840
mRNA
_2841
11205
11206
11207
11208
11209
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.9
N.D.
-0.1
-0.4
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.7
N.D.
-0.1
-0.6
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
N.D.
-0.1
-0.7
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
N.D.
-0.5
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
N.D.
+0.2
-0.8
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
-0.2
-0.6
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
N.D.
+0.2
-0.8
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
+0.1
-0.8
-0.1
auxotrophy
Dropout Complete
-0.3
N.D.
+0.0
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
N.D.
+0.1
-0.8
+0.3
growth on oleic acid
YNB Oleic Acid
-0.8
N.D.
+0.1
+0.3
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
-0.0
-0.4
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.8
N.D.
+0.0
+0.4
+0.0
growth on oleic acid
YNB Glucose
-0.4
N.D.
-0.0
+0.2
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
N.D.
+0.3
-0.8
+0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.0
N.D.
-0.0
-0.3
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
+0.1
-0.0
+0.1
auxotrophy
YNB Glucose
+0.1
N.D.
+0.1
+0.0
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
N.D.
-0.0
+0.0
-0.0
growth on ricinoleic acid
YNB Glucose
+0.2
N.D.
-0.2
+0.5
-0.2
growth on ypd
YPD
+0.5
N.D.
+0.2
+0.1
+0.4
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