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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11207 and 11208 are separated by 301 nucleotides
11208 and 11209 are separated by 358 nucleotides
11209 and 11210 are separated by 765 nucleotides
11210 and 11211 are separated by 393 nucleotides
mRNA_2839: 11207 - K01427 URE urease, at 333,745 to 337,824
11207
mRNA_2840: 11208 - KOG4178 Soluble epoxide hydrolase, at 338,126 to 339,492
11208
mRNA_2841: 11209 - KOG3290 Peroxisomal phytanoyl-CoA hydroxylase, at 339,851 to 340,983
11209
mRNA_2842: 11210 - Hypothetical Protein, at 341,749 to 343,529
11210
mRNA_2843: 11211 - Hypothetical Protein, at 343,923 to 345,879
11211
Group
Condition
mRNA
_2839
mRNA
_2840
mRNA
_2841
mRNA
_2842
mRNA
_2843
11207
11208
11209
11210
11211
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.7
-0.5
-0.5
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.6
+0.0
-0.2
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.4
-0.2
+0.3
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
+0.3
-0.2
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.8
-0.1
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.8
-0.1
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.6
+0.0
+0.2
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.8
-0.1
+0.6
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.4
+0.2
+0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.3
+0.2
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.8
+0.3
+0.4
+0.3
growth on ypd
YPD
+0.2
+0.1
+0.4
-0.2
-0.4
auxotrophy
Dropout Complete
+0.0
-0.2
-0.1
+0.4
+0.1
growth on ricinoleic acid
YNB Glucose
-0.2
+0.5
-0.2
+0.2
-0.1
growth on oleic acid
YNB Glucose
-0.0
+0.2
-0.1
+0.1
+0.1
growth on oleic acid
YNB Oleic Acid
+0.1
+0.3
+0.0
+0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.0
+0.1
+0.3
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.8
+0.5
+0.2
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.0
-0.0
+0.2
+0.5
auxotrophy
YNB Glucose
+0.1
+0.0
-0.2
+0.6
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.4
+0.0
+0.3
-0.0
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