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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11209 and 11210 are separated by 765 nucleotides
11210 and 11211 are separated by 393 nucleotides
11211 and 11212 are separated by 436 nucleotides
11212 and 11213 are separated by 192 nucleotides
mRNA_2841: 11209 - KOG3290 Peroxisomal phytanoyl-CoA hydroxylase, at 339,851 to 340,983
11209
mRNA_2842: 11210 - Hypothetical Protein, at 341,749 to 343,529
11210
mRNA_2843: 11211 - Hypothetical Protein, at 343,923 to 345,879
11211
mRNA_2844: 11212 - SUPERFAMILY--SSF54427, at 346,316 to 346,839
11212
mRNA_2845: 11213 - K14767 UTP3, SAS10 U3 small nucleolar RNA-associated protein 3, at 347,032 to 349,782
11213
Group
Condition
mRNA
_2841
mRNA
_2842
mRNA
_2843
mRNA
_2844
mRNA
_2845
11209
11210
11211
11212
11213
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.5
+0.3
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.1
+0.4
-0.6
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.2
+0.3
-0.5
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.3
+0.1
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
+0.0
+0.1
-0.0
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.1
+0.1
-0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.3
-0.1
-0.0
N.D.
growth on ricinoleic acid
YNB Glucose
-0.2
+0.2
-0.1
+0.1
N.D.
growth on oleic acid
YNB Glucose
-0.1
+0.1
+0.1
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.2
+0.5
-0.5
N.D.
growth on ypd
YPD
+0.4
-0.2
-0.4
+0.3
N.D.
auxotrophy
YNB Glucose
-0.2
+0.6
+0.2
-0.4
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.1
-0.1
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.2
+0.4
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.3
+0.0
+0.1
N.D.
auxotrophy
Dropout Complete
-0.1
+0.4
+0.1
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.6
+0.2
+0.0
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
+0.2
+0.3
-0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.2
-0.1
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.4
+0.3
-0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.3
-0.0
+0.7
N.D.
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