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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11215 and 11216 are separated by 950 nucleotides
11216 and 11217 are separated by 1380 nucleotides
11217 and 11218 are separated by 300 nucleotides
11218 and 11219 are separated by 401 nucleotides
mRNA_2847: 11215 - ProSitePatterns-Zinc finger RING-type signature.-PS00518, at 351,577 to 353,493
11215
mRNA_2848: 11216 - HMMPfam-GMC oxidoreductase-PF00732,HMMPfam-GMC oxidoreductase-PF05199,PIRSF--PIRSF000137,ProSitePatterns-GMC oxidoreductases signature 2.-PS00624,SUPERFAMILY--SSF51905,SUPERFAMILY--SSF54373, at 354,444 to 356,897
11216
mRNA_2849: 11217 - K01611 speD, AMD1 S-adenosylmethionine decarboxylase, at 358,278 to 359,885
11217
mRNA_2850: 11218 - SUPERFAMILY--SSF52047, at 360,186 to 362,999
11218
mRNA_2851: 11219 - SUPERFAMILY--SSF52047, at 363,401 to 364,630
11219
Group
Condition
mRNA
_2847
mRNA
_2848
mRNA
_2849
mRNA
_2850
mRNA
_2851
11215
11216
11217
11218
11219
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.8
-0.1
N.D.
+0.0
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.1
+0.1
N.D.
-0.0
-0.3
growth on ypd
YPD
-0.6
+0.3
N.D.
-0.2
-0.2
auxotrophy
Dropout Complete
-0.7
-0.1
N.D.
+0.3
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.5
-0.1
N.D.
+0.4
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.1
N.D.
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.1
N.D.
-0.1
+0.1
growth on oleic acid
YNB Glucose
-0.2
-0.0
N.D.
-0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.1
N.D.
-0.4
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
N.D.
-0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.2
N.D.
+0.1
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
+0.2
N.D.
+0.2
+0.1
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
N.D.
+0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.1
N.D.
+0.3
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.1
N.D.
-0.0
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.0
N.D.
+0.0
+0.1
auxotrophy
YNB Glucose
-0.2
+0.2
N.D.
+0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.1
N.D.
-0.0
+0.3
growth on ricinoleic acid
YNB Glucose
+0.2
+0.0
N.D.
+0.2
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.5
N.D.
+0.0
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
+0.1
N.D.
+0.0
+0.7
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