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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11217 and 11218 are separated by 300 nucleotides
11218 and 11219 are separated by 401 nucleotides
11219 and 11220 are separated by 270 nucleotides
11220 and 11221 are separated by 356 nucleotides
mRNA_2849: 11217 - K01611 speD, AMD1 S-adenosylmethionine decarboxylase, at 358,278 to 359,885
11217
mRNA_2850: 11218 - SUPERFAMILY--SSF52047, at 360,186 to 362,999
11218
mRNA_2851: 11219 - SUPERFAMILY--SSF52047, at 363,401 to 364,630
11219
mRNA_2852: 11220 - K01164 POP1 ribonuclease P/MRP protein subunit POP1, at 364,901 to 367,915
11220
mRNA_2853: 11221 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 368,272 to 370,458
11221
Group
Condition
mRNA
_2849
mRNA
_2850
mRNA
_2851
mRNA
_2852
mRNA
_2853
11217
11218
11219
11220
11221
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.4
-0.3
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.0
-0.5
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.0
-0.1
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.4
-0.3
N.D.
-0.4
auxotrophy
Dropout Complete
N.D.
+0.3
-0.1
N.D.
-0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.0
+0.1
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
+0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.0
-0.3
N.D.
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
+0.0
N.D.
-0.2
growth on oleic acid
YNB Glucose
N.D.
-0.0
-0.1
N.D.
+0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
-0.0
N.D.
-0.1
auxotrophy
YNB Glucose
N.D.
+0.1
+0.1
N.D.
-0.2
growth on ypd
YPD
N.D.
-0.2
-0.2
N.D.
+0.5
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.3
-0.0
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.0
+0.1
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.0
+0.1
N.D.
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.0
+0.3
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
+0.0
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.0
+0.2
N.D.
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
+0.1
N.D.
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.0
+0.7
N.D.
-0.0
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