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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11218 and 11219 are separated by 401 nucleotides
11219 and 11220 are separated by 270 nucleotides
11220 and 11221 are separated by 356 nucleotides
11221 and 11222 are separated by 640 nucleotides
mRNA_2850: 11218 - SUPERFAMILY--SSF52047, at 360,186 to 362,999
11218
mRNA_2851: 11219 - SUPERFAMILY--SSF52047, at 363,401 to 364,630
11219
mRNA_2852: 11220 - K01164 POP1 ribonuclease P/MRP protein subunit POP1, at 364,901 to 367,915
11220
mRNA_2853: 11221 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 368,272 to 370,458
11221
mRNA_2854: 11222 - KOG2084 Predicted histone tail methylase containing SET domain, at 371,099 to 373,142
11222
Group
Condition
mRNA
_2850
mRNA
_2851
mRNA
_2852
mRNA
_2853
mRNA
_2854
11218
11219
11220
11221
11222
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.3
N.D.
-0.5
-1.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.5
N.D.
+0.2
-0.2
growth on ypd
YPD
-0.2
-0.2
N.D.
+0.5
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.1
N.D.
-0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.1
N.D.
-0.2
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.0
N.D.
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.3
N.D.
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.1
N.D.
-0.2
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.3
N.D.
-0.4
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.1
N.D.
+0.2
-0.2
growth on oleic acid
YNB Oleic Acid
+0.1
+0.0
N.D.
-0.2
+0.1
auxotrophy
Dropout Complete
+0.3
-0.1
N.D.
-0.3
+0.2
auxotrophy
YNB Glucose
+0.1
+0.1
N.D.
-0.2
+0.1
growth on ricinoleic acid
YNB Glucose
+0.2
+0.0
N.D.
+0.1
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.3
N.D.
+0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.2
N.D.
+0.2
+0.1
growth on oleic acid
YNB Glucose
-0.0
-0.1
N.D.
+0.0
+0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.0
N.D.
-0.1
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.1
N.D.
+0.1
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.1
N.D.
+0.5
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.7
N.D.
-0.0
+0.2
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