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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11225 and 11226 are separated by 246 nucleotides
11226 and 11227 are separated by 336 nucleotides
11227 and 11228 are separated by 332 nucleotides
11228 and 11229 are separated by 316 nucleotides
mRNA_2857: 11225 - K11247 SH3GL endophilin-A, at 382,503 to 383,665
11225
mRNA_2858: 11226 - HMMPfam-Translocon-associated protein (TRAP), alpha subunit-PF03896, at 383,912 to 385,065
11226
mRNA_2859: 11227 - Hypothetical Protein, at 385,402 to 386,720
11227
mRNA_2860: 11228 - K11811 arsH arsenical resistance protein ArsH, at 387,053 to 388,029
11228
mRNA_2861: 11229 - KOG4754 Predicted phosphoglycerate mutase, at 388,346 to 389,336
11229
Group
Condition
mRNA
_2857
mRNA
_2858
mRNA
_2859
mRNA
_2860
mRNA
_2861
11225
11226
11227
11228
11229
ypd buoyancy
40 hrs No Buoyancy Separation
-1.4
-0.1
-0.1
-1.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
-0.3
-0.4
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.7
-0.2
+0.1
+0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-0.3
-0.0
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
-0.1
-0.4
+0.4
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.3
-0.2
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
-0.2
+0.1
-0.1
+0.0
N.D.
growth on oleic acid
YNB Oleic Acid
-0.0
-0.2
-0.1
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.1
-0.2
+0.0
N.D.
growth on ypd
YPD
+0.1
-0.5
+0.1
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.3
+0.0
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.4
-0.2
+0.4
N.D.
auxotrophy
YNB Glucose
+0.4
+0.1
-0.2
-0.2
N.D.
auxotrophy
Dropout Complete
+0.4
+0.2
-0.2
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.1
-0.1
-0.0
N.D.
growth on oleic acid
YNB Glucose
+0.4
-0.1
+0.0
+0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.1
-0.0
+0.6
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.3
-0.0
+0.5
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.2
+0.3
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.7
+0.2
+0.2
-0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.4
+0.0
+0.6
N.D.
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