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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11226 and 11227 are separated by 336 nucleotides
11227 and 11228 are separated by 332 nucleotides
11228 and 11229 are separated by 316 nucleotides
11229 and 11230 are separated by 642 nucleotides
mRNA_2858: 11226 - HMMPfam-Translocon-associated protein (TRAP), alpha subunit-PF03896, at 383,912 to 385,065
11226
mRNA_2859: 11227 - Hypothetical Protein, at 385,402 to 386,720
11227
mRNA_2860: 11228 - K11811 arsH arsenical resistance protein ArsH, at 387,053 to 388,029
11228
mRNA_2861: 11229 - KOG4754 Predicted phosphoglycerate mutase, at 388,346 to 389,336
11229
mRNA_2862: 11230 - PRINTS-Proline rich extensin signature-PR01217, at 389,979 to 392,232
11230
Group
Condition
mRNA
_2858
mRNA
_2859
mRNA
_2860
mRNA
_2861
mRNA
_2862
11226
11227
11228
11229
11230
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.1
-1.4
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.4
-0.1
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.0
+0.2
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.2
+0.4
N.D.
-0.5
auxotrophy
Dropout Complete
+0.2
-0.2
-0.1
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.4
+0.4
N.D.
-0.5
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.2
-0.1
N.D.
+0.2
auxotrophy
YNB Glucose
+0.1
-0.2
-0.2
N.D.
+0.0
growth on oleic acid
YNB Oleic Acid
-0.2
-0.1
+0.1
N.D.
+0.1
growth on oleic acid
YNB Glucose
-0.1
+0.0
+0.1
N.D.
-0.1
growth on ypd
YPD
-0.5
+0.1
+0.2
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.1
-0.0
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.1
+0.0
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.0
+0.6
N.D.
-0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.2
+0.0
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.2
-0.3
N.D.
+0.0
growth on ricinoleic acid
YNB Glucose
+0.1
-0.1
+0.0
N.D.
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.0
+0.6
N.D.
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.3
+0.3
N.D.
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.0
+0.1
N.D.
+0.7
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.0
+0.5
N.D.
+0.3
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