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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11228 and 11229 are separated by 316 nucleotides
11229 and 11230 are separated by 642 nucleotides
11230 and 11231 are separated by 212 nucleotides
11231 and 11232 are separated by 129 nucleotides
mRNA_2860: 11228 - K11811 arsH arsenical resistance protein ArsH, at 387,053 to 388,029
11228
mRNA_2861: 11229 - KOG4754 Predicted phosphoglycerate mutase, at 388,346 to 389,336
11229
mRNA_2862: 11230 - PRINTS-Proline rich extensin signature-PR01217, at 389,979 to 392,232
11230
mRNA_2863: 11231 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 392,445 to 393,702
11231
mRNA_2864: 11232 - KOG2699 Predicted ubiquitin regulatory protein, at 393,832 to 395,067
11232
Group
Condition
mRNA
_2860
mRNA
_2861
mRNA
_2862
mRNA
_2863
mRNA
_2864
11228
11229
11230
11231
11232
auxotrophy
YNB Glucose
-0.2
N.D.
+0.0
-0.6
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
N.D.
-0.5
-0.8
-0.5
growth on oleic acid
YNB Glucose
+0.1
N.D.
-0.1
-1.3
-0.0
auxotrophy
Dropout Complete
-0.1
N.D.
-0.5
+0.2
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
N.D.
-0.9
-0.7
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
N.D.
-0.5
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
N.D.
+0.1
-0.4
-0.2
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
+0.1
-0.5
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.3
N.D.
+0.0
+0.0
-0.4
growth on ypd
YPD
+0.2
N.D.
+0.1
-0.7
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
N.D.
+0.0
-0.2
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
N.D.
-0.5
+0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.3
N.D.
-0.0
-0.3
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-1.4
N.D.
+0.2
+0.7
+0.4
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
+0.2
+0.3
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
N.D.
+0.1
+0.4
-0.4
growth on ricinoleic acid
YNB Glucose
+0.0
N.D.
+0.2
+0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.6
N.D.
-0.3
-0.1
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
N.D.
+0.3
+0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
N.D.
+0.3
-0.5
+0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
+0.7
+0.6
+0.0
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