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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11231 and 11232 are separated by 129 nucleotides
11232 and 11233 are separated by 298 nucleotides
11233 and 11234 are separated by 368 nucleotides
11234 and 11235 are separated by 419 nucleotides
mRNA_2863: 11231 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 392,445 to 393,702
11231
mRNA_2864: 11232 - KOG2699 Predicted ubiquitin regulatory protein, at 393,832 to 395,067
11232
mRNA_2865: 11233 - SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717, at 395,366 to 397,041
11233
mRNA_2866: 11234 - ProSiteProfiles-Myb-like domain profile.-PS50090,SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717,SUPERFAMILY--SSF46689, at 397,410 to 402,844
11234
mRNA_2867: 11235 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657,SUPERFAMILY--SSF52266, at 403,264 to 404,865
11235
Group
Condition
mRNA
_2863
mRNA
_2864
mRNA
_2865
mRNA
_2866
mRNA
_2867
11231
11232
11233
11234
11235
growth on oleic acid
YNB Glucose
-1.3
-0.0
-0.6
-0.1
+0.2
auxotrophy
YNB Glucose
-0.6
-0.7
-0.4
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.8
-0.5
+0.0
-0.3
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.1
-0.8
-0.2
-0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.2
-0.5
-0.0
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
+0.3
-0.4
-0.1
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.2
-1.0
-0.1
+0.0
growth on oleic acid
YNB Oleic Acid
-0.5
-0.3
+0.2
-0.2
-0.2
auxotrophy
Dropout Complete
+0.2
-0.4
-0.5
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.4
-0.3
+0.1
-0.2
growth on ypd
YPD
-0.7
-0.1
+0.3
-0.0
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
-0.2
-0.1
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
-0.2
+0.5
-0.1
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.0
-0.7
+0.2
+0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.2
+0.2
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.3
+0.6
-0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
+0.6
+0.1
-0.2
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.4
+0.4
-0.2
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.6
+0.0
+0.1
+0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.4
+0.3
+0.1
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.7
+0.4
+0.6
+0.0
+0.5
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