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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11233 and 11234 are separated by 368 nucleotides
11234 and 11235 are separated by 419 nucleotides
11235 and 11236 are separated by 595 nucleotides
11236 and 11237 are separated by 514 nucleotides
mRNA_2865: 11233 - SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717, at 395,366 to 397,041
11233
mRNA_2866: 11234 - ProSiteProfiles-Myb-like domain profile.-PS50090,SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717,SUPERFAMILY--SSF46689, at 397,410 to 402,844
11234
mRNA_2867: 11235 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657,SUPERFAMILY--SSF52266, at 403,264 to 404,865
11235
mRNA_2868: 11236 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657,SUPERFAMILY--SSF52266, at 405,461 to 407,348
11236
mRNA_2869: 11237 - KOG4170 2-enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/Peroxisomal 3-ketoacyl-CoA-thiolase, sterol-binding domain and related enzymes, at 407,863 to 408,924
11237
Group
Condition
mRNA
_2865
mRNA
_2866
mRNA
_2867
mRNA
_2868
mRNA
_2869
11233
11234
11235
11236
11237
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.8
-0.2
-0.5
-0.3
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.0
-0.1
+0.0
-0.3
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
+0.0
-0.3
-0.1
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.1
-0.3
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.1
-0.2
+0.1
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
+0.2
+0.4
+0.1
-0.2
growth on oleic acid
YNB Glucose
-0.6
-0.1
+0.2
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.3
+0.1
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.0
-0.3
+0.3
+0.4
auxotrophy
Dropout Complete
-0.5
+0.1
-0.2
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
-0.1
-0.0
-0.3
-0.1
growth on oleic acid
YNB Oleic Acid
+0.2
-0.2
-0.2
+0.2
-0.1
auxotrophy
YNB Glucose
-0.4
+0.1
-0.0
+0.1
+0.1
growth on ypd
YPD
+0.3
-0.0
-0.1
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
-0.1
+0.2
-0.4
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
-0.1
-0.2
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.2
+0.5
-0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.1
-0.0
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.2
+0.3
-0.2
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.1
+0.3
-0.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
+0.0
+0.5
+0.2
+0.1
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