Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 11233 and 11234 are separated by 368 nucleotides11234 and 11235 are separated by 419 nucleotides11235 and 11236 are separated by 595 nucleotides11236 and 11237 are separated by 514 nucleotides mRNA_2865: 11233 - SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717, at 395,366 to 397,041 11233 mRNA_2866: 11234 - ProSiteProfiles-Myb-like domain profile.-PS50090,SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717,SUPERFAMILY--SSF46689, at 397,410 to 402,844 11234 mRNA_2867: 11235 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657,SUPERFAMILY--SSF52266, at 403,264 to 404,865 11235 mRNA_2868: 11236 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657,SUPERFAMILY--SSF52266, at 405,461 to 407,348 11236 mRNA_2869: 11237 - KOG4170 2-enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/Peroxisomal 3-ketoacyl-CoA-thiolase, sterol-binding domain and related enzymes, at 407,863 to 408,924 11237
Group Condition mRNA_2865 mRNA_2866 mRNA_2867 mRNA_2868 mRNA_2869
11233 11234 11235 11236 11237
growth on ricinoleic acid YNB Methylricinoleic Acid -0.8 -0.2 -0.5 -0.3 -0.1
growth on ricinoleic acid YNB Ricinoleic Acid -1.0 -0.1 +0.0 -0.3 -0.1
growth on ricinoleic acid YNB Glucose -0.1 +0.0 -0.3 -0.1 -0.3
facs on lipid accumulation Sorted Low BODIPY Gate -0.4 -0.1 -0.3 +0.0 +0.1
auxotrophy YNB Glucose 75mM Methionine -0.3 +0.1 -0.2 +0.1 +0.0
facs on lipid accumulation Sorted No BODIPY Gate -0.7 +0.2 +0.4 +0.1 -0.2
growth on oleic acid YNB Glucose -0.6 -0.1 +0.2 +0.4 -0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.0 -0.3 +0.1 -0.1 +0.0
auxotrophy YNB Glucose 75mM Arginine -0.5 -0.0 -0.3 +0.3 +0.4
auxotrophy Dropout Complete -0.5 +0.1 -0.2 +0.3 +0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.5 -0.1 -0.0 -0.3 -0.1
growth on oleic acid YNB Oleic Acid +0.2 -0.2 -0.2 +0.2 -0.1
auxotrophy YNB Glucose -0.4 +0.1 -0.0 +0.1 +0.1
growth on ypd YPD +0.3 -0.0 -0.1 +0.2 -0.3
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.6 -0.1 +0.2 -0.4 -0.2
ypd buoyancy 40 hrs Median Buoyancy +0.1 +0.1 -0.1 -0.2 +0.1
facs on lipid accumulation Sorted High BODIPY Gate +0.1 -0.2 +0.5 -0.1 -0.1
ypd buoyancy 40 hrs Low Buoyancy +0.2 +0.1 -0.0 +0.1 -0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.4 -0.2 +0.3 -0.2 -0.0
ypd buoyancy 40 hrs High Buoyancy +0.3 +0.1 +0.3 -0.1 +0.1
ypd buoyancy 40 hrs No Buoyancy Separation +0.6 +0.0 +0.5 +0.2 +0.1
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