Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 11235 and 11236 are separated by 595 nucleotides11236 and 11237 are separated by 514 nucleotides11237 and 11238 are separated by 223 nucleotides11238 and 11239 are separated by 413 nucleotides mRNA_2867: 11235 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657,SUPERFAMILY--SSF52266, at 403,264 to 404,865 11235 mRNA_2868: 11236 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657,SUPERFAMILY--SSF52266, at 405,461 to 407,348 11236 mRNA_2869: 11237 - KOG4170 2-enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/Peroxisomal 3-ketoacyl-CoA-thiolase, sterol-binding domain and related enzymes, at 407,863 to 408,924 11237 mRNA_2870: 11238 - SUPERFAMILY--SSF64182, at 409,148 to 410,896 11238 mRNA_2871: 11239 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 411,310 to 412,108 11239
Group Condition mRNA_2867 mRNA_2868 mRNA_2869 mRNA_2870 mRNA_2871
11235 11236 11237 11238 11239
facs on lipid accumulation Sorted Low BODIPY Gate -0.3 +0.0 +0.1 -0.6 -0.1
auxotrophy YNB Glucose 75mM Methionine -0.2 +0.1 +0.0 -0.2 -0.3
growth on ricinoleic acid YNB Methylricinoleic Acid -0.5 -0.3 -0.1 +0.6 -0.3
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.2 -0.4 -0.2 -0.2 +0.2
auxotrophy YNB Glucose -0.0 +0.1 +0.1 -0.4 -0.2
growth on ricinoleic acid YNB Glucose -0.3 -0.1 -0.3 +0.5 -0.2
growth on ricinoleic acid YNB Ricinoleic Acid +0.0 -0.3 -0.1 +0.0 -0.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.0 -0.3 -0.1 -0.1 +0.2
auxotrophy Dropout Complete -0.2 +0.3 +0.2 -0.5 -0.2
facs on lipid accumulation Sorted High BODIPY Gate +0.5 -0.1 -0.1 -0.2 -0.4
facs on lipid accumulation Sorted No BODIPY Gate +0.4 +0.1 -0.2 -0.3 -0.3
ypd buoyancy 40 hrs Low Buoyancy -0.0 +0.1 -0.2 -0.0 -0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.3 -0.2 -0.0 -0.2 -0.0
growth on ypd YPD -0.1 +0.2 -0.3 -0.0 +0.1
auxotrophy YNB Glucose 75mM Arginine -0.3 +0.3 +0.4 -0.4 -0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.1 -0.1 +0.0 -0.1 -0.0
ypd buoyancy 40 hrs Median Buoyancy -0.1 -0.2 +0.1 +0.2 -0.1
ypd buoyancy 40 hrs High Buoyancy +0.3 -0.1 +0.1 +0.2 -0.0
growth on oleic acid YNB Oleic Acid -0.2 +0.2 -0.1 +0.1 +0.5
growth on oleic acid YNB Glucose +0.2 +0.4 -0.1 -0.1 +0.1
ypd buoyancy 40 hrs No Buoyancy Separation +0.5 +0.2 +0.1 -0.2 +0.3
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