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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11235 and 11236 are separated by 595 nucleotides
11236 and 11237 are separated by 514 nucleotides
11237 and 11238 are separated by 223 nucleotides
11238 and 11239 are separated by 413 nucleotides
mRNA_2867: 11235 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657,SUPERFAMILY--SSF52266, at 403,264 to 404,865
11235
mRNA_2868: 11236 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657,SUPERFAMILY--SSF52266, at 405,461 to 407,348
11236
mRNA_2869: 11237 - KOG4170 2-enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/Peroxisomal 3-ketoacyl-CoA-thiolase, sterol-binding domain and related enzymes, at 407,863 to 408,924
11237
mRNA_2870: 11238 - SUPERFAMILY--SSF64182, at 409,148 to 410,896
11238
mRNA_2871: 11239 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 411,310 to 412,108
11239
Group
Condition
mRNA
_2867
mRNA
_2868
mRNA
_2869
mRNA
_2870
mRNA
_2871
11235
11236
11237
11238
11239
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.0
+0.1
-0.6
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.1
+0.0
-0.2
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-0.3
-0.1
+0.6
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.4
-0.2
-0.2
+0.2
auxotrophy
YNB Glucose
-0.0
+0.1
+0.1
-0.4
-0.2
growth on ricinoleic acid
YNB Glucose
-0.3
-0.1
-0.3
+0.5
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.3
-0.1
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.3
-0.1
-0.1
+0.2
auxotrophy
Dropout Complete
-0.2
+0.3
+0.2
-0.5
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
-0.1
-0.1
-0.2
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.1
-0.2
-0.3
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.1
-0.2
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.2
-0.0
-0.2
-0.0
growth on ypd
YPD
-0.1
+0.2
-0.3
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.3
+0.4
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.1
+0.0
-0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.2
+0.1
+0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.1
+0.1
+0.2
-0.0
growth on oleic acid
YNB Oleic Acid
-0.2
+0.2
-0.1
+0.1
+0.5
growth on oleic acid
YNB Glucose
+0.2
+0.4
-0.1
-0.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
+0.2
+0.1
-0.2
+0.3
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