Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
11236 and 11237 are separated by 514 nucleotides
11237 and 11238 are separated by 223 nucleotides
11238 and 11239 are separated by 413 nucleotides
11239 and 11240 are separated by 378 nucleotides
mRNA_2868: 11236 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657,SUPERFAMILY--SSF52266, at 405,461 to 407,348
11236
mRNA_2869: 11237 - KOG4170 2-enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/Peroxisomal 3-ketoacyl-CoA-thiolase, sterol-binding domain and related enzymes, at 407,863 to 408,924
11237
mRNA_2870: 11238 - SUPERFAMILY--SSF64182, at 409,148 to 410,896
11238
mRNA_2871: 11239 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 411,310 to 412,108
11239
mRNA_2872: 11240 - HMMPfam-Pyridine nucleotide-disulphide oxidoreductase-PF00070,PRINTS-FAD-dependent pyridine nucleotide reductase signature-PR00368,PRINTS-Pyridine nucleotide disulphide reductase class-I signature-PR00411,SUPERFAMILY--SSF51905, at 412,487 to 414,015
11240
Group
Condition
mRNA
_2868
mRNA
_2869
mRNA
_2870
mRNA
_2871
mRNA
_2872
11236
11237
11238
11239
11240
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.2
-0.3
-0.3
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.1
-0.6
-0.1
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.1
-0.2
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.2
-0.2
+0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.0
-0.2
-0.3
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
-0.0
-0.2
-0.1
auxotrophy
YNB Glucose
+0.1
+0.1
-0.4
-0.2
+0.0
auxotrophy
Dropout Complete
+0.3
+0.2
-0.5
-0.2
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.1
+0.0
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.1
-0.1
+0.2
+0.1
growth on ricinoleic acid
YNB Glucose
-0.1
-0.3
+0.5
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.0
-0.2
-0.0
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.1
+0.6
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.0
-0.1
-0.0
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.1
+0.2
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.4
-0.4
-0.1
+0.0
growth on ypd
YPD
+0.2
-0.3
-0.0
+0.1
+0.2
growth on oleic acid
YNB Glucose
+0.4
-0.1
-0.1
+0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
+0.2
-0.0
+0.1
growth on oleic acid
YNB Oleic Acid
+0.2
-0.1
+0.1
+0.5
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.1
-0.2
+0.3
+0.4
remove
mRNA_2868
plot
remove
mRNA_2869
plot
remove
mRNA_2870
remove
mRNA_2871
plot
remove
mRNA_2872
plot