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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11237 and 11238 are separated by 223 nucleotides
11238 and 11239 are separated by 413 nucleotides
11239 and 11240 are separated by 378 nucleotides
11240 and 11241 are separated by 195 nucleotides
mRNA_2869: 11237 - KOG4170 2-enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/Peroxisomal 3-ketoacyl-CoA-thiolase, sterol-binding domain and related enzymes, at 407,863 to 408,924
11237
mRNA_2870: 11238 - SUPERFAMILY--SSF64182, at 409,148 to 410,896
11238
mRNA_2871: 11239 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 411,310 to 412,108
11239
mRNA_2872: 11240 - HMMPfam-Pyridine nucleotide-disulphide oxidoreductase-PF00070,PRINTS-FAD-dependent pyridine nucleotide reductase signature-PR00368,PRINTS-Pyridine nucleotide disulphide reductase class-I signature-PR00411,SUPERFAMILY--SSF51905, at 412,487 to 414,015
11240
mRNA_2873: 11241 - HMMPfam-Yeast cortical protein KAR9-PF08580,ProSiteProfiles-GAR domain profile.-PS51460,SUPERFAMILY--SSF143575, at 414,211 to 417,159
11241
Group
Condition
mRNA
_2869
mRNA
_2870
mRNA
_2871
mRNA
_2872
mRNA
_2873
11237
11238
11239
11240
11241
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.6
-0.1
-0.5
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.3
-0.3
-0.4
+0.3
auxotrophy
Dropout Complete
+0.2
-0.5
-0.2
-0.2
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.2
-0.4
+0.1
-0.0
auxotrophy
YNB Glucose
+0.1
-0.4
-0.2
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.2
-0.3
-0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.0
-0.2
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.2
+0.2
+0.1
-0.1
growth on ricinoleic acid
YNB Glucose
-0.3
+0.5
-0.2
-0.1
-0.0
growth on ypd
YPD
-0.3
-0.0
+0.1
+0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.4
-0.1
+0.0
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.2
-0.1
+0.1
-0.2
growth on oleic acid
YNB Glucose
-0.1
-0.1
+0.1
-0.0
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.0
-0.0
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.1
-0.0
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.1
+0.2
+0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.6
-0.3
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.2
-0.0
+0.3
+0.3
growth on oleic acid
YNB Oleic Acid
-0.1
+0.1
+0.5
-0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.2
-0.0
+0.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.2
+0.3
+0.4
+0.3
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