Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 11238 and 11239 are separated by 413 nucleotides11239 and 11240 are separated by 378 nucleotides11240 and 11241 are separated by 195 nucleotides11241 and 11242 are separated by 261 nucleotides mRNA_2870: 11238 - SUPERFAMILY--SSF64182, at 409,148 to 410,896 11238 mRNA_2871: 11239 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 411,310 to 412,108 11239 mRNA_2872: 11240 - HMMPfam-Pyridine nucleotide-disulphide oxidoreductase-PF00070,PRINTS-FAD-dependent pyridine nucleotide reductase signature-PR00368,PRINTS-Pyridine nucleotide disulphide reductase class-I signature-PR00411,SUPERFAMILY--SSF51905, at 412,487 to 414,015 11240 mRNA_2873: 11241 - HMMPfam-Yeast cortical protein KAR9-PF08580,ProSiteProfiles-GAR domain profile.-PS51460,SUPERFAMILY--SSF143575, at 414,211 to 417,159 11241 mRNA_2874: 11242 - K00555 TRMT1, trm1 tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase, at 417,421 to 420,167 11242
Group Condition mRNA_2870 mRNA_2871 mRNA_2872 mRNA_2873 mRNA_2874
11238 11239 11240 11241 11242
facs on lipid accumulation Sorted Low BODIPY Gate -0.6 -0.1 -0.5 -0.0 -1.2
auxotrophy YNB Glucose 75mM Arginine -0.4 -0.1 +0.0 +0.2 -1.3
facs on lipid accumulation Sorted High BODIPY Gate -0.2 -0.4 +0.1 -0.0 -1.2
facs on lipid accumulation Sorted No BODIPY Gate -0.3 -0.3 -0.4 +0.3 -0.8
growth on oleic acid YNB Glucose -0.1 +0.1 -0.0 +0.2 -1.3
auxotrophy YNB Glucose 75mM Methionine -0.2 -0.3 -0.1 +0.1 -0.1
growth on ricinoleic acid YNB Glucose +0.5 -0.2 -0.1 -0.0 -0.7
growth on oleic acid YNB Oleic Acid +0.1 +0.5 -0.2 +0.2 -1.1
auxotrophy YNB Glucose -0.4 -0.2 +0.0 -0.1 +0.3
auxotrophy Dropout Complete -0.5 -0.2 -0.2 -0.1 +0.9
ypd buoyancy 40 hrs Low Buoyancy -0.0 -0.2 -0.1 +0.1 +0.2
growth on ricinoleic acid YNB Ricinoleic Acid +0.0 -0.0 +0.2 -0.0 -0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.1 -0.0 +0.1 +0.1 +0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 +0.2 +0.1 +0.1 +0.3
growth on ricinoleic acid YNB Methylricinoleic Acid +0.6 -0.3 -0.0 +0.0 +0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.2 +0.2 +0.1 -0.1 +0.7
ypd buoyancy 40 hrs No Buoyancy Separation -0.2 +0.3 +0.4 +0.3 -0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.2 -0.0 +0.3 +0.3 +0.4
ypd buoyancy 40 hrs Median Buoyancy +0.2 -0.1 +0.1 -0.2 +1.0
ypd buoyancy 40 hrs High Buoyancy +0.2 -0.0 +0.1 +0.1 +0.7
growth on ypd YPD -0.0 +0.1 +0.2 +0.1 +1.7
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