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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11244 and 11245 are separated by 227 nucleotides
11245 and 11246 are separated by 127 nucleotides
11246 and 11247 are separated by 187 nucleotides
11247 and 11248 are separated by 1059 nucleotides
mRNA_2876: 11244 - K18715 NUP159 nucleoporin NUP159, at 422,380 to 429,450
11244
mRNA_2877: 11245 - Hypothetical Protein, at 429,678 to 431,024
11245
mRNA_2878: 11246 - BLAST proteophosphoglycan ppg4 [Moesziomyces aphidis DSM 70..., at 431,152 to 434,004
11246
mRNA_2879: 11247 - HMMPfam-Protein of unknown function (DUF3237)-PF11578, at 434,192 to 435,080
11247
mRNA_2880: 11248 - K10531 pvdA L-ornithine N5-oxygenase, at 436,140 to 438,445
11248
Group
Condition
mRNA
_2876
mRNA
_2877
mRNA
_2878
mRNA
_2879
mRNA
_2880
11244
11245
11246
11247
11248
growth on ypd
YPD
-0.2
-0.2
-0.2
-0.0
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.2
+0.0
-0.4
-0.1
growth on oleic acid
YNB Oleic Acid
+0.5
-0.1
-0.1
-0.3
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.8
-0.1
+0.2
+0.4
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.4
-0.1
+0.1
+0.8
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
+0.1
+0.1
+1.6
-0.2
auxotrophy
YNB Glucose
+0.8
+0.2
-0.1
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.0
-0.1
+0.8
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
+0.1
+0.2
-0.4
+0.3
auxotrophy
Dropout Complete
+0.4
-0.1
+0.1
+0.5
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.9
+0.1
-0.4
+0.3
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.6
-0.1
-0.0
+0.3
-0.1
growth on oleic acid
YNB Glucose
+0.4
+0.1
-0.2
+0.6
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
+0.0
-0.2
+0.8
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
-0.2
+0.1
+0.7
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+1.0
+0.1
+0.0
+0.3
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+1.7
-0.1
+0.3
-0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.5
-0.3
+0.2
+1.0
+0.2
growth on ricinoleic acid
YNB Glucose
+1.3
+0.4
-0.3
+0.9
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+2.1
+0.4
-0.1
-0.2
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+2.3
+0.3
-0.2
+0.9
+0.2
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