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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11245 and 11246 are separated by 127 nucleotides
11246 and 11247 are separated by 187 nucleotides
11247 and 11248 are separated by 1059 nucleotides
11248 and 11249 are separated by 947 nucleotides
mRNA_2877: 11245 - Hypothetical Protein, at 429,678 to 431,024
11245
mRNA_2878: 11246 - BLAST proteophosphoglycan ppg4 [Moesziomyces aphidis DSM 70..., at 431,152 to 434,004
11246
mRNA_2879: 11247 - HMMPfam-Protein of unknown function (DUF3237)-PF11578, at 434,192 to 435,080
11247
mRNA_2880: 11248 - K10531 pvdA L-ornithine N5-oxygenase, at 436,140 to 438,445
11248
mRNA_2881: 11249 - KOG0254 Predicted transporter (major facilitator superfamily), at 439,393 to 442,330
11249
Group
Condition
mRNA
_2877
mRNA
_2878
mRNA
_2879
mRNA
_2880
mRNA
_2881
11245
11246
11247
11248
11249
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
-0.3
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.4
+0.3
-0.1
-0.5
growth on ypd
YPD
-0.2
-0.2
-0.0
+0.0
-0.1
auxotrophy
YNB Glucose
+0.2
-0.1
-0.1
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.1
+0.7
-0.2
-0.6
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.0
+0.3
-0.1
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.3
-0.2
-0.2
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.0
-0.4
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.2
+0.8
-0.0
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.1
+0.8
+0.1
-0.7
growth on oleic acid
YNB Glucose
+0.1
-0.2
+0.6
-0.1
-0.2
auxotrophy
Dropout Complete
-0.1
+0.1
+0.5
-0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.1
+1.6
-0.2
-1.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.2
-0.4
+0.3
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.1
-0.2
+0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.0
+0.3
-0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.2
+0.4
+0.3
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
+0.8
+0.2
-0.1
growth on ricinoleic acid
YNB Glucose
+0.4
-0.3
+0.9
+0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.2
+1.0
+0.2
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.2
+0.9
+0.2
+0.2
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