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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11246 and 11247 are separated by 187 nucleotides
11247 and 11248 are separated by 1059 nucleotides
11248 and 11249 are separated by 947 nucleotides
11249 and 11250 are separated by 736 nucleotides
mRNA_2878: 11246 - BLAST proteophosphoglycan ppg4 [Moesziomyces aphidis DSM 70..., at 431,152 to 434,004
11246
mRNA_2879: 11247 - HMMPfam-Protein of unknown function (DUF3237)-PF11578, at 434,192 to 435,080
11247
mRNA_2880: 11248 - K10531 pvdA L-ornithine N5-oxygenase, at 436,140 to 438,445
11248
mRNA_2881: 11249 - KOG0254 Predicted transporter (major facilitator superfamily), at 439,393 to 442,330
11249
mRNA_2882: 11250 - Hypothetical Protein, at 443,067 to 444,033
11250
Group
Condition
mRNA
_2878
mRNA
_2879
mRNA
_2880
mRNA
_2881
mRNA
_2882
11246
11247
11248
11249
11250
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.3
-0.1
-0.5
-0.6
growth on oleic acid
YNB Oleic Acid
-0.1
-0.3
-0.3
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.8
+0.1
-0.7
-0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.7
-0.2
-0.6
-0.5
growth on ypd
YPD
-0.2
-0.0
+0.0
-0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.4
-0.1
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.8
-0.0
-0.5
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+1.6
-0.2
-1.3
-0.2
auxotrophy
YNB Glucose
-0.1
-0.1
-0.2
-0.1
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.3
-0.1
-0.3
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.2
-0.2
+0.0
-0.0
growth on oleic acid
YNB Glucose
-0.2
+0.6
-0.1
-0.2
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.4
+0.3
+0.2
+0.1
growth on ricinoleic acid
YNB Glucose
-0.3
+0.9
+0.0
+0.1
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.2
+0.2
+0.1
+0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.3
-0.1
+0.2
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.9
+0.2
+0.2
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.4
+0.3
-0.0
+0.2
auxotrophy
Dropout Complete
+0.1
+0.5
-0.1
-0.1
+0.7
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.8
+0.2
-0.1
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+1.0
+0.2
+0.1
+0.4
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