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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11247 and 11248 are separated by 1059 nucleotides
11248 and 11249 are separated by 947 nucleotides
11249 and 11250 are separated by 736 nucleotides
11250 and 11251 are separated by 1166 nucleotides
mRNA_2879: 11247 - HMMPfam-Protein of unknown function (DUF3237)-PF11578, at 434,192 to 435,080
11247
mRNA_2880: 11248 - K10531 pvdA L-ornithine N5-oxygenase, at 436,140 to 438,445
11248
mRNA_2881: 11249 - KOG0254 Predicted transporter (major facilitator superfamily), at 439,393 to 442,330
11249
mRNA_2882: 11250 - Hypothetical Protein, at 443,067 to 444,033
11250
mRNA_2883: 11251 - K16675 ZDHHC9_14_18 palmitoyltransferase ZDHHC9/14/18, at 445,200 to 447,494
11251
Group
Condition
mRNA
_2879
mRNA
_2880
mRNA
_2881
mRNA
_2882
mRNA
_2883
11247
11248
11249
11250
11251
growth on oleic acid
YNB Oleic Acid
-0.3
-0.3
-0.2
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.1
-0.5
-0.6
+0.0
growth on ypd
YPD
-0.0
+0.0
-0.1
-0.1
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.1
+0.3
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
-0.2
-0.6
-0.5
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.1
-0.3
+0.0
-0.0
auxotrophy
YNB Glucose
-0.1
-0.2
-0.1
+0.3
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.8
+0.1
-0.7
-0.7
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.2
+0.0
-0.0
+0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.8
-0.0
-0.5
-0.3
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.3
+0.2
+0.1
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.3
-0.0
+0.2
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+1.6
-0.2
-1.3
-0.2
+0.8
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.1
+0.2
+0.2
-0.0
auxotrophy
Dropout Complete
+0.5
-0.1
-0.1
+0.7
-0.3
growth on oleic acid
YNB Glucose
+0.6
-0.1
-0.2
+0.0
+0.4
growth on ricinoleic acid
YNB Glucose
+0.9
+0.0
+0.1
-0.3
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.2
+0.1
+0.5
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.8
+0.2
-0.1
+0.3
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.9
+0.2
+0.2
-0.4
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+1.0
+0.2
+0.1
+0.4
+0.1
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