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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11255 and 11256 are separated by 451 nucleotides
11256 and 11257 are separated by 363 nucleotides
11257 and 11258 are separated by 271 nucleotides
11258 and 11259 are separated by 700 nucleotides
mRNA_2887: 11255 - K07442 TRM61, GCD14 tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit, at 458,953 to 460,669
11255
mRNA_2888: 11256 - KOG1012 Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain, at 461,121 to 465,686
11256
mRNA_2889: 11257 - K08184 SLC16A7 MFS transporter, MCP family, solute carrier family 16 (monocarboxylic acid transporters), member 7, at 466,050 to 468,099
11257
mRNA_2890: 11258 - HMMPfam-Protein of unknown function (DUF2823)-PF11034, at 468,371 to 468,835
11258
mRNA_2891: 11259 - Hypothetical Protein, at 469,536 to 470,476
11259
Group
Condition
mRNA
_2887
mRNA
_2888
mRNA
_2889
mRNA
_2890
mRNA
_2891
11255
11256
11257
11258
11259
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
+0.0
N.D.
-2.6
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
-0.3
N.D.
-1.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
-0.3
N.D.
-0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
+0.4
N.D.
-1.3
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
-0.0
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
+0.2
N.D.
-0.7
growth on ypd
YPD
N.D.
+0.0
-0.2
N.D.
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
-0.1
N.D.
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.1
-0.3
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.0
+0.4
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
+0.3
N.D.
-0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
+0.2
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.0
+0.0
N.D.
+0.4
growth on oleic acid
YNB Glucose
N.D.
-0.0
-0.1
N.D.
+0.7
auxotrophy
Dropout Complete
N.D.
+0.0
-0.2
N.D.
+0.8
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
-0.3
N.D.
+1.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.3
+0.5
N.D.
+0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
+0.3
N.D.
+0.7
growth on oleic acid
YNB Oleic Acid
N.D.
-0.0
+0.1
N.D.
+1.1
auxotrophy
YNB Glucose
N.D.
+0.1
-0.0
N.D.
+1.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.1
-0.5
N.D.
+1.9
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